RetrogeneDB ID: | retro_pabe_464 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:167269453..167269717(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGP | ||
Ensembl ID: | ENSPPYG00000011409 | ||
Aliases: | PIGP, DSCR5 | ||
Description: | phosphatidylinositol N-acetylglucosaminyltransferase subunit P [Source:RefSeq peptide;Acc:NP_001127401] |
Percent Identity: | 65.91 % |
Parental protein coverage: | 65.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVENSPSPLPERAIYGFVLFLSSQFGFILYLVWAFIPESWLNSLGLTYWPQKYWAVALPVYLLIAIVIGY |
..ENSP.PLPERA.YG.VLFL.SQFGF...L.W...PESWLNS.GL.YWPQKYWAVALPVYL...IV..Y | |
Retrocopy | VMENSPLPLPERAMYGSVLFLNSQFGFMPSLLWTLAPESWLNSSGLHYWPQKYWAVALPVYLHSTIVTSY |
Parental | VLLFGINMMSTSPLDSIH |
VL.FG...MS.S.....H | |
Retrocopy | VLFFGTKVMSISLSTQLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 25 .77 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .85 RPM |
SRP007412_heart | 0 .00 RPM | 9 .21 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .63 RPM |
SRP007412_liver | 0 .00 RPM | 5 .32 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_163 |
Pan troglodytes | retro_ptro_156 |
Macaca mulatta | retro_mmul_377 |