RetrogeneDB ID: | retro_pabe_493 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:209839626..209840288(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 76.89 % |
Parental protein coverage: | 84.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | AAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIF-LRNRLKYALTGDEVKKICMQRFIKIDGKVRTDIT |
...K.WML..LT.V.AP.PST.PHKLR.CLPLIIF.LRNR.KYALTGDE.K.I.M.R.IKID.KV.TD.T | |
Retrocopy | SSSKQWMLETLTDVSAPHPSTSPHKLRVCLPLIIF>LRNRIKYALTGDELK-IWMLRLIKIDNKVQTDRT |
Parental | YPAGFMDVISIDKTGENFRLIYDTK-GRFAVHRITPEEAKYKLCKVRKIF-VGTKGIPHLVTHDARTIRY |
YPAGF.DVI.IDKT.ENFRLI.....G.FA.H.IT.EEAKYKLCKVRKI..V.TKGIPHLVT.DA.TIRY | |
Retrocopy | YPAGFKDVIIIDKTRENFRLICNIR<GYFAIHHITAEEAKYKLCKVRKIL<VATKGIPHLVTDDAGTIRY |
Parental | PDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFA |
P.PLIKVND.I.IDL.TGK..D.IKFDTG.L.MVTGGANLGRIGVITNRERHPGSFDVVHVKDAN.NSFA | |
Retrocopy | PGPLIKVNDIIRIDLDTGKSSDVIKFDTGHLWMVTGGANLGRIGVITNRERHPGSFDVVHVKDANSNSFA |
Parental | TRLSNIFVIGKGNKS |
T..S.IFVIGKGNK. | |
Retrocopy | TWPSSIFVIGKGNKT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .50 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .85 RPM | 73 .08 RPM |
SRP007412_heart | 0 .03 RPM | 87 .60 RPM |
SRP007412_kidney | 0 .00 RPM | 131 .16 RPM |
SRP007412_liver | 0 .06 RPM | 137 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_120 |
Pan troglodytes | retro_ptro_131 |
Gorilla gorilla | retro_ggor_223 |