RetrogeneDB ID: | retro_hsap_1942 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 18:49371374..49371986(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000215457 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS8 | ||
Ensembl ID: | ENSG00000142937 | ||
Aliases: | RPS8, S8 | ||
Description: | ribosomal protein S8 [Source:HGNC Symbol;Acc:10441] |
Percent Identity: | 76.7 % |
Parental protein coverage: | 97.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DNWHKRRKTGGKRK-PYHKKRKYELG-RPAANTKIGPR-RIHTVRVRGGNKKYRALRLDVGNFSWGSECC |
DN.HKR.KTGGKRK.P.........G.R..ANTKI.P..RIHTV.V.G.N.KY.ALRLD.GNFSWGSECC | |
Retrocopy | DN*HKRCKTGGKRK>PTTRSESMSWGARLVANTKISPA<RIHTVHVQGRNEKYCALRLDKGNFSWGSECC |
Parental | TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRS |
T..T.IIDVVYNA.NNELVRTKTLVK.CI.LI.S.PY.QWY.SHYALPLGRKKG.KLT.EEEEILNKKR. | |
Retrocopy | TCTTVIIDVVYNAFNNELVRTKTLVKKCIMLINSAPYQQWYQSHYALPLGRKKGTKLTAEEEEILNKKRP |
Parental | KKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK |
KKI.KKYD.RK.NAKISSLLEEQFQQG.LLACI.SR.GQCG.ADGYVLEGKE.EF.LRKIKA.K.K | |
Retrocopy | KKIHKKYDKRKQNAKISSLLEEQFQQGRLLACITSRVGQCGQADGYVLEGKEMEFCLRKIKAWKSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 539 .85 RPM |
bodymap2_adrenal | 0 .00 RPM | 743 .31 RPM |
bodymap2_brain | 0 .00 RPM | 176 .67 RPM |
bodymap2_breast | 0 .00 RPM | 378 .82 RPM |
bodymap2_colon | 0 .04 RPM | 728 .15 RPM |
bodymap2_heart | 0 .00 RPM | 195 .24 RPM |
bodymap2_kidney | 0 .00 RPM | 362 .07 RPM |
bodymap2_liver | 0 .00 RPM | 310 .90 RPM |
bodymap2_lung | 0 .00 RPM | 931 .68 RPM |
bodymap2_lymph_node | 0 .00 RPM | 1170 .01 RPM |
bodymap2_ovary | 0 .00 RPM | 1161 .80 RPM |
bodymap2_prostate | 0 .00 RPM | 1422 .79 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 536 .16 RPM |
bodymap2_testis | 0 .00 RPM | 415 .20 RPM |
bodymap2_thyroid | 0 .00 RPM | 416 .32 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1200 .50 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |