RetrogeneDB ID: | retro_hsap_3158 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 5:33162284..33162910(+) | ||
Located in intron of: | ENSG00000250697 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000240376 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS8 | ||
Ensembl ID: | ENSG00000142937 | ||
Aliases: | RPS8, S8 | ||
Description: | ribosomal protein S8 [Source:HGNC Symbol;Acc:10441] |
Percent Identity: | 93.81 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVG-NFSWGS |
MGISRDNWH.RRKTGGKRKPYHKKRKYEL.RPAANTKIGPRRIHTVRV.G.NKKYRALRLDVG.NFSWGS | |
Retrocopy | MGISRDNWHQRRKTGGKRKPYHKKRKYELERPAANTKIGPRRIHTVRVQGSNKKYRALRLDVG>NFSWGS |
Parental | ECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYE-SHYALPLGRKKGAKLTPEEEEILN |
ECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTP.RQW...SHY.LPLGRKKGAKLTPEEEEILN | |
Retrocopy | ECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPCRQW*D>SHYVLPLGRKKGAKLTPEEEEILN |
Parental | KKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK |
KKR.K.IQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGK.LEFYLRKIKARKGK | |
Retrocopy | KKRFKQIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKGLEFYLRKIKARKGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .52 RPM | 539 .85 RPM |
bodymap2_adrenal | 0 .33 RPM | 743 .31 RPM |
bodymap2_brain | 0 .23 RPM | 176 .67 RPM |
bodymap2_breast | 0 .27 RPM | 378 .82 RPM |
bodymap2_colon | 0 .87 RPM | 728 .15 RPM |
bodymap2_heart | 0 .00 RPM | 195 .24 RPM |
bodymap2_kidney | 0 .31 RPM | 362 .07 RPM |
bodymap2_liver | 0 .06 RPM | 310 .90 RPM |
bodymap2_lung | 0 .14 RPM | 931 .68 RPM |
bodymap2_lymph_node | 0 .26 RPM | 1170 .01 RPM |
bodymap2_ovary | 0 .75 RPM | 1161 .80 RPM |
bodymap2_prostate | 0 .33 RPM | 1422 .79 RPM |
bodymap2_skeletal_muscle | 0 .35 RPM | 536 .16 RPM |
bodymap2_testis | 0 .40 RPM | 415 .20 RPM |
bodymap2_thyroid | 0 .41 RPM | 416 .32 RPM |
bodymap2_white_blood_cells | 0 .26 RPM | 1200 .50 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_153615 | 14 libraries | 2 libraries | 29 libraries | 68 libraries | 1716 libraries |
TSS #2 | TSS_153616 | 224 libraries | 300 libraries | 1051 libraries | 185 libraries | 69 libraries |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_1357 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 1 .03 RPM |
CEU_NA11843 | 1 .17 RPM |
CEU_NA11930 | 1 .53 RPM |
CEU_NA12004 | 0 .53 RPM |
CEU_NA12400 | 1 .02 RPM |
CEU_NA12751 | 1 .29 RPM |
CEU_NA12760 | 1 .84 RPM |
CEU_NA12827 | 1 .46 RPM |
CEU_NA12872 | 0 .73 RPM |
CEU_NA12873 | 0 .67 RPM |
FIN_HG00183 | 1 .62 RPM |
FIN_HG00277 | 1 .04 RPM |
FIN_HG00315 | 1 .08 RPM |
FIN_HG00321 | 0 .97 RPM |
FIN_HG00328 | 0 .64 RPM |
FIN_HG00338 | 1 .06 RPM |
FIN_HG00349 | 1 .62 RPM |
FIN_HG00375 | 0 .98 RPM |
FIN_HG00377 | 0 .76 RPM |
FIN_HG00378 | 0 .93 RPM |
GBR_HG00099 | 1 .08 RPM |
GBR_HG00111 | 0 .77 RPM |
GBR_HG00114 | 0 .39 RPM |
GBR_HG00119 | 0 .77 RPM |
GBR_HG00131 | 1 .09 RPM |
GBR_HG00133 | 0 .87 RPM |
GBR_HG00134 | 0 .52 RPM |
GBR_HG00137 | 1 .07 RPM |
GBR_HG00142 | 1 .06 RPM |
GBR_HG00143 | 0 .51 RPM |
TSI_NA20512 | 0 .48 RPM |
TSI_NA20513 | 0 .44 RPM |
TSI_NA20518 | 1 .94 RPM |
TSI_NA20532 | 0 .68 RPM |
TSI_NA20538 | 0 .92 RPM |
TSI_NA20756 | 1 .16 RPM |
TSI_NA20765 | 0 .66 RPM |
TSI_NA20771 | 1 .22 RPM |
TSI_NA20786 | 0 .71 RPM |
TSI_NA20798 | 0 .53 RPM |
YRI_NA18870 | 1 .56 RPM |
YRI_NA18907 | 0 .49 RPM |
YRI_NA18916 | 1 .03 RPM |
YRI_NA19093 | 0 .57 RPM |
YRI_NA19099 | 1 .01 RPM |
YRI_NA19114 | 0 .92 RPM |
YRI_NA19118 | 0 .66 RPM |
YRI_NA19213 | 0 .60 RPM |
YRI_NA19214 | 0 .34 RPM |
YRI_NA19223 | 0 .38 RPM |