RetrogeneDB ID: | retro_chof_1258 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_239013:241..653(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCHOG00000009968 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS8 | ||
Ensembl ID: | ENSCHOG00000008785 | ||
Aliases: | None | ||
Description: | ribosomal protein S8 [Source:HGNC Symbol;Acc:10441] |
Percent Identity: | 71.01 % |
Parental protein coverage: | 99.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PLSSQRLTMGITLDNRHKRRKTGGKRKPYLKKRKYELGIPSANTXXXXXXXXXXGVRGGNRKYRALKWDV |
PLSSQ....GI..DN.HK.RKTGGKR.PY.KK..YELG.P.ANT...........V.GGN.KY.AL..DV | |
Retrocopy | PLSSQHHAVGISQDNWHKHRKTGGKRRPYCKKWRYELGCPAANTKIGPRRIHTVRV*GGNKKYYALRLDV |
Parental | EDFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPY-RQWYESHYALPLGRKKGAKL |
..FSW.SECCT.KTRIID.VYNAS.NELV.TKTLVKNC.VLIDSTPY.RQWYESHYALPLG.KKGAKL | |
Retrocopy | GNFSWDSECCTHKTRIIDIVYNASKNELVFTKTLVKNCVVLIDSTPY>RQWYESHYALPLGHKKGAKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |