RetrogeneDB ID:

retro_ttru_1839

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_93883:9268..9901(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS8
Ensembl ID:ENSTTRG00000003388
Aliases:None
Description:ribosomal protein S8 [Source:HGNC Symbol;Acc:10441]


Retrocopy-Parental alignment summary:






>retro_ttru_1839
CAGCACCGAGTGTTTGGCATCTCTCGGGACAACTGGCACAAGCGCCACAAGACTGGGGGCAAGAGAAAGCCCTACCACAA
GAAGCAGAAGTATGTGCTGGGACACCCCACTGACACCAAGGTTGACCCCCCACTGCATACACACAGTCTGTGGGTGGGGA
GGCAACAGGAAGTACCAGGCCTTGAGGCTGGATGTAGGGAACTTCTTCTGGGGCTCGGAATGTTGTACGTGCAAGACAAG
GATAACTGATGTTGTCTACAATGCATCCAACCACGAACTGTTCTGTACCAAGACCCTGGTAAAGAACTGCATCATGCTCA
TTGACAGCACACCATACGGACAGTGGCACAAGTCCCACTATGCACTGCCCCTGGGCTACAAGAAGGGGGCCAAGATGACT
CCTGAGGAGGAAGAGATATTAAACAAAAAACAATCAAAAAAATTCAGAAGAAATATGATGGAAAGAAAACGGATGCCAAA
ATCAGCAGTCTTCTAGAGGAGCAGTTCCAGCAGGGCAAGGTTCTTGCATGCATCGCTTCAAGACCAGGCCAGTGTGGCCG
AGTAGACGGCTATGTGCTAGAGGGAAAGGAGCTGGAATTCTATCTGAGGAAAATCAAGGCCTGGAAAATCAAA

ORF - retro_ttru_1839 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.7 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalQRRAMGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGP-RRIHTVRVRGGNKKYRALRLDVGNF
Q.R..GISRDNWHKR.KTGGKRKPYHKK.KY.LG.P...TK..P...IHTV...GGN.KY.ALRLDVGNF
RetrocopyQHRVFGISRDNWHKRHKTGGKRKPYHKKQKYVLGHPT-DTKVDP>HCIHTVCGWGGNRKYQALRLDVGNF
ParentalSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEE
.WGSECCT.KTRI.DVVYNASN.EL..TKTLVKNCI.LIDSTPY.QW..SHYALPLG.KKGAK.TPEEEE
RetrocopyFWGSECCTCKTRITDVVYNASNHELFCTKTLVKNCIMLIDSTPYGQWHKSHYALPLGYKKGAKMTPEEEE
ParentalILNKKRSKKIQK-KYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKA
I............KYD..K..AKISSLLEEQFQQGK.LACIASRPGQCGR.DGYVLEGKELEFYLRKIKA
RetrocopyIXXXXXXXXFRR<KYDGKKTDAKISSLLEEQFQQGKVLACIASRPGQCGRVDGYVLEGKELEFYLRKIKA
ParentalRKGK
.K.K
RetrocopyWKIK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1839 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1839 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 91 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000156971 retrocopy
Choloepus hoffmanni ENSCHOG0000000878510 retrocopies
Callithrix jacchus ENSCJAG000000041975 retrocopies
Dipodomys ordii ENSDORG000000092871 retrocopy
Homo sapiens ENSG000001429378 retrocopies
Gorilla gorilla ENSGGOG000000056455 retrocopies
Myotis lucifugus ENSMLUG0000000155930 retrocopies
Macaca mulatta ENSMMUG000000152702 retrocopies
Monodelphis domestica ENSMODG000000283891 retrocopy
Oryctolagus cuniculus ENSOCUG000000124761 retrocopy
Otolemur garnettii ENSOGAG0000000692216 retrocopies
Pan troglodytes ENSPTRG000000006591 retrocopy
Rattus norvegicus ENSRNOG000000187682 retrocopies
Sorex araneus ENSSARG000000008991 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000063223 retrocopies
Tursiops truncatus ENSTTRG00000003388 4 retrocopies



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