RetrogeneDB ID: | retro_hsap_2997 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:157893782..157894105(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000250622 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSG00000109475 | ||
Aliases: | RPL34, L34 | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 65.14 % |
Parental protein coverage: | 90.6 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | LSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRL-RGVRAVRPKVLMRLSKTKK-HV-SRA |
LSYNTASNKTRL..TPG.RIVY.YTKKV.K..KS........L.R...A.RPKVLMR.S..K..H..SRA | |
Retrocopy | LSYNTASNKTRLP*TPGDRIVYIYTKKVEKELKSLVACVQADLEREADALRPKVLMR*SEMKH<HMPSRA |
Parental | YGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKA |
YGGSM.AK.V.DRI.RAF..E.QKI.V.VLKAQA.SQK. | |
Retrocopy | YGGSMSAKYVCDRIQRAFFVEKQKIIVNVLKAQAESQKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 419 .31 RPM |
bodymap2_adrenal | 0 .00 RPM | 769 .57 RPM |
bodymap2_brain | 0 .00 RPM | 183 .84 RPM |
bodymap2_breast | 0 .00 RPM | 451 .46 RPM |
bodymap2_colon | 0 .00 RPM | 750 .27 RPM |
bodymap2_heart | 0 .00 RPM | 148 .09 RPM |
bodymap2_kidney | 0 .00 RPM | 272 .59 RPM |
bodymap2_liver | 0 .00 RPM | 186 .14 RPM |
bodymap2_lung | 0 .00 RPM | 692 .23 RPM |
bodymap2_lymph_node | 0 .00 RPM | 808 .72 RPM |
bodymap2_ovary | 0 .00 RPM | 610 .59 RPM |
bodymap2_prostate | 0 .00 RPM | 887 .12 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 251 .28 RPM |
bodymap2_testis | 0 .00 RPM | 477 .68 RPM |
bodymap2_thyroid | 0 .09 RPM | 340 .56 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 928 .04 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF002CGN | POLR2A | 4:157892779..157893084 |
ENCFF002CKX | POLR2A | 4:157892616..157893036 |
ENCFF002CUP | POLR2A | 4:157892774..157893090 |
ENCFF002CVJ | POLR2A | 4:157892613..157893223 |
ENCFF002CZC | POLR2A | 4:157892674..157893214 |
ENCFF002CZD | POLR2A | 4:157892641..157893151 |
ENCFF002DBT | POLR2A | 4:157892707..157893077 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |