RetrogeneDB ID: | retro_tsyr_1087 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_30132:1606..1950(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL34 | ||
Ensembl ID: | ENSTSYG00000001781 | ||
Aliases: | None | ||
Description: | ribosomal protein L34 [Source:HGNC Symbol;Acc:10340] |
Percent Identity: | 70.69 % |
Parental protein coverage: | 97.44 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR-PKVLMRLSK |
MVQ.LT.....SYNTASNK.RL..TPGNRIVYLY.KKVGKAPKSAC.V.P.RL.GV.AVR.PK.L....K | |
Retrocopy | MVQHLTHHHKFSYNTASNKARLFQTPGNRIVYLYIKKVGKAPKSACVVYPDRL*GVHAVR>PKFL*GCPK |
Parental | TK-KHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQ |
.K.KH.SR.YGG.MCAKC.RDRI..AFL.EE.KIV.KVLKAQA.S. | |
Retrocopy | KK>KHGSRTYGGFMCAKCARDRIEHAFLFEEHKIVAKVLKAQAESE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |