RetrogeneDB ID: | retro_rnor_866 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 12:19202724..19203018(+) | ||
Located in intron of: | ENSRNOG00000030354 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl34 | ||
Ensembl ID: | ENSRNOG00000016387 | ||
Aliases: | Rpl34, Rpl34l2 | ||
Description: | 60S ribosomal protein L34 [Source:RefSeq peptide;Acc:NP_001102037] |
Percent Identity: | 75.96 % |
Parental protein coverage: | 86.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MVQRLTY-RRRLSYNTASNKTRLSRTPGN-RIVYLYTKK-VGKAPKSACGVCPGRLRGVRAVRPKVLMRL |
MVQ.LTY.R.RLSYNT.SNKTRL..TPG..R.VYLYTKK..GKAP.S.C..CPGRLRGVRA.RP.VLMR. | |
Retrocopy | MVQHLTY<RHRLSYNTTSNKTRLFGTPGK<RSVYLYTKK>LGKAPRSSCILCPGRLRGVRAGRPNVLMRS |
Parental | SKTKKHQQGLWWLHVRQVCP-GQIKRAFLIEEQK |
SKTKK..QG.WWLHV.QVCP...IKRAFLIEEQK | |
Retrocopy | SKTKK--QGQWWLHVCQVCP>DRIKRAFLIEEQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 49 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 73 .69 RPM |
SRP017611_liver | 0 .00 RPM | 44 .58 RPM |