RetrogeneDB ID: | retro_rnor_1844 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:158696909..158697213(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl34 | ||
Ensembl ID: | ENSRNOG00000016387 | ||
Aliases: | Rpl34, Rpl34l2 | ||
Description: | 60S ribosomal protein L34 [Source:RefSeq peptide;Acc:NP_001102037] |
Percent Identity: | 65.71 % |
Parental protein coverage: | 88.03 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAP-KSACGVCPGRLRGVRAVRPKVLMRLSK |
M.Q.LT...RLSY...SNKTRLS.TP.NRIV.LYTKK.GK.P.KS.C.V.PGR..G..A.RPKVLMRLSK | |
Retrocopy | MAQHLT*HCRLSYDPSSNKTRLSQTPDNRIVHLYTKKAGKPP<KSICAVYPGRQPGFHAIRPKVLMRLSK |
Parental | TKKHVSRAYGGSMCAKCVRDRIKRA-FLIEEQKIV |
T.........G.MCA.CV.DRIK.A.FLIEEQKIV | |
Retrocopy | TENGQQDLW-GPMCADCV*DRIKNA<FLIEEQKIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 49 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 73 .69 RPM |
SRP017611_liver | 0 .00 RPM | 44 .58 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_2115 |