RetrogeneDB ID: | retro_rnor_367 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 17:80517939..80518293(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000038045 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl34 | ||
Ensembl ID: | ENSRNOG00000016387 | ||
Aliases: | Rpl34, Rpl34l2 | ||
Description: | 60S ribosomal protein L34 [Source:RefSeq peptide;Acc:NP_001102037] |
Percent Identity: | 98.29 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT |
MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKV.KAPKSACGVCPGRLRGVRAVRPKVLMRLSKT | |
Retrocopy | MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVRKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT |
Parental | KKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK |
KKHVSRAYGGSMCA.CVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK | |
Retrocopy | KKHVSRAYGGSMCAQCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .29 RPM | 49 .11 RPM |
SRP017611_kidney | 0 .63 RPM | 73 .69 RPM |
SRP017611_liver | 0 .34 RPM | 44 .58 RPM |