RetrogeneDB ID: | retro_rnor_1575 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:229447021..229447338(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl34 | ||
Ensembl ID: | ENSRNOG00000016387 | ||
Aliases: | Rpl34, Rpl34l2 | ||
Description: | 60S ribosomal protein L34 [Source:RefSeq peptide;Acc:NP_001102037] |
Percent Identity: | 75.23 % |
Parental protein coverage: | 92.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RLSYNTASNKTRLSRT-PGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAY |
RLSYNTASNKTRLS.T.PGNRIVYLYT...GK.P............G...VRPKVL.RL.KTKK..SRAY | |
Retrocopy | RLSYNTASNKTRLS*T<PGNRIVYLYTRRSGKHPNPHVAYAQADCEGF--VRPKVLLRLPKTKKYISRAY |
Parental | GGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK |
GGSMCAKC.RDRIK.AFLIEEQKIVVKVLKAQAQSQKAK | |
Retrocopy | GGSMCAKCDRDRIKQAFLIEEQKIVVKVLKAQAQSQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 49 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 73 .69 RPM |
SRP017611_liver | 0 .00 RPM | 44 .58 RPM |