RetrogeneDB ID: | retro_rnor_617 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:172510551..172510876(-) | ||
Located in intron of: | ENSRNOG00000019319 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl34 | ||
Ensembl ID: | ENSRNOG00000016387 | ||
Aliases: | Rpl34, Rpl34l2 | ||
Description: | 60S ribosomal protein L34 [Source:RefSeq peptide;Acc:NP_001102037] |
Percent Identity: | 75.89 % |
Parental protein coverage: | 94.02 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | RRRL-SYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGV-CPGRLRGVRAVRPKVLMRLSKTKKHVS |
RRRL.SYNT.SNKTRLS.TPGNR.VY.YT.K.G.......G..CPGR.RGV.AVRPKV..RLSKTKK..S | |
Retrocopy | RRRL<SYNTVSNKTRLS*TPGNRTVYFYT-KKGGTAPKSFGA<CPGRQRGVCAVRPKVPVRLSKTKKQDS |
Parental | RAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK |
RAYGGSM.A..V.DRIK.AFLIEEQKIVVKVLKAQAQSQKAK | |
Retrocopy | RAYGGSM*A*GVCDRIKPAFLIEEQKIVVKVLKAQAQSQKAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 49 .11 RPM |
SRP017611_kidney | 0 .00 RPM | 73 .69 RPM |
SRP017611_liver | 0 .00 RPM | 44 .58 RPM |