RetrogeneDB ID:

retro_tsyr_872

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_22516:5303..5648(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL34
Ensembl ID:ENSTSYG00000001781
Aliases:None
Description:ribosomal protein L34 [Source:HGNC Symbol;Acc:10340]


Retrocopy-Parental alignment summary:






>retro_tsyr_872
ATGGTCCAGCATTTGACATACAATCGTAGGCTTTCCCACAATACAGCCTCTAACAAAACTAGGCTGTCCTGAACCCCTGG
TAATAGGATTGTTTACCTATATACCAAGAAGGTAGGGAAAGCACCAAAGTCTGCATGTGGTGTGTGCCCAGGCAGACTTC
GAGGGGTTCGTGCTGTGAGACCCAAAGTTCTTATGCGGTTGTCCAAAACAAAAAAACATGTCAGCCAGGTCTATGGTGAT
GTGATGTGTGCAAAATGTGTTAGTGATGGGATCAAGCATGCTTTTCTTATCGAGGAGCAGAAAATCGTCATGAAAGTGTT
GAAGACCCAAGCATACAAAGCAAAA

ORF - retro_tsyr_872 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 86.09 %
Parental protein coverage: 98.29 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT
MVQ.LTY.RRLS.NTASNKTRLS.TPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT
RetrocopyMVQHLTYNRRLSHNTASNKTRLS*TPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKT
ParentalKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQK
KKHVS..YG..MCAKCV.D.IK.AFLIEEQKIV.KVLK.QA...K
RetrocopyKKHVSQVYGDVMCAKCVSDGIKHAFLIEEQKIVMKVLKTQAYKAK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_872 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 182 retrocopies.

Species Parental gene accession Retrocopies number
Dasypus novemcinctus ENSDNOG0000001117926 retrocopies
Homo sapiens ENSG0000010947533 retrocopies
Gadus morhua ENSGMOG000000099821 retrocopy
Loxodonta africana ENSLAFG000000326156 retrocopies
Macropus eugenii ENSMEUG000000093613 retrocopies
Myotis lucifugus ENSMLUG000000004644 retrocopies
Monodelphis domestica ENSMODG000000206013 retrocopies
Pelodiscus sinensis ENSPSIG000000032951 retrocopy
Rattus norvegicus ENSRNOG0000001638736 retrocopies
Sarcophilus harrisii ENSSHAG000000013571 retrocopy
Sarcophilus harrisii ENSSHAG000000020523 retrocopies
Tupaia belangeri ENSTBEG0000000357424 retrocopies
Tarsius syrichta ENSTSYG00000001781 34 retrocopies
Tursiops truncatus ENSTTRG000000034436 retrocopies
Xenopus tropicalis ENSXETG000000210951 retrocopy



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