RetrogeneDB ID: | retro_hsap_3889 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:109638533..109639681(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000232199 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSG00000100316 | ||
Aliases: | RPL3, ASC-1, L3, TARBP-B | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 74.68 % |
Parental protein coverage: | 95.53 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 6 |
Parental | MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKK |
.S..KF..P..GSLGFLP.KRSSR..GKVKSFPKD.PSKP.HLTAFLGYKAGM..I..E.D.PGSKVNK. | |
Retrocopy | LSNWKFTVPWLGSLGFLPWKRSSRLHGKVKSFPKDEPSKPFHLTAFLGYKAGMAYIM*EADSPGSKVNK- |
Parental | EVVEAVTIVETPPMVVVGIV-GYVETPRGLRTFKTVFAEHISDECK-RRFYKNWHK-SKKKAFTKYCKKW |
EVVEAVT.VETPPMVVVGIV.GY.E...GL.TFKTVFAEHIS.ECK.R.F.KN.H..S.K.AFTKY.KKW | |
Retrocopy | EVVEAVTVVETPPMVVVGIV<GYMEIAQGLQTFKTVFAEHISNECK<RCFHKNRHN<SIKMAFTKYYKKW |
Parental | QDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL-MEIQVNGGTVAEKLDWARERLEQQVP |
Q.EDG.KQLEK.F.SMK.YCQVI..IAHT.M.LLPL.QKKA...MEIQVN.GTVAEKLD.A.E.LE.QVP | |
Retrocopy | QNEDGNKQLEKEFNSMKMYCQVISIIAHT*MCLLPLCQKKARR<MEIQVN*GTVAEKLD*AWEMLEHQVP |
Parental | VNQVFGQDEMIDVIGVTKGKGYK-GVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYH |
VNQVFG.D..ID.I.VTK.KGYK.GVTS.WHTKKL..KTH..L.K...I..WHPA.VAFSVA.AGQKGYH | |
Retrocopy | VNQVFG*DRVIDAIEVTKCKGYK>GVTSHWHTKKLTHKTHQRLCKAPYIRMWHPACVAFSVACAGQKGYH |
Parental | HRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVL |
H.TE.NKKI..IG.GYL.KD.K.IKNNASTD.DLSDKSINPLGGFVHY.E..NDFVMLKGCVVG.KK.VL | |
Retrocopy | HCTENNKKICNIGHGYLTKDEKWIKNNASTDGDLSDKSINPLGGFVHYNEMNNDFVMLKGCVVGIKK*VL |
Parental | T-LRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEK |
T.LRK.L.VQTKR.ALEK.DLKFI.T.S.FG...FQTMEEK | |
Retrocopy | T<LRKPLMVQTKRPALEKTDLKFINTVSRFGRDHFQTMEEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 1680 .36 RPM |
bodymap2_adrenal | 0 .00 RPM | 1617 .45 RPM |
bodymap2_brain | 0 .00 RPM | 431 .16 RPM |
bodymap2_breast | 0 .00 RPM | 1202 .87 RPM |
bodymap2_colon | 0 .00 RPM | 1954 .47 RPM |
bodymap2_heart | 0 .00 RPM | 136 .94 RPM |
bodymap2_kidney | 0 .00 RPM | 828 .19 RPM |
bodymap2_liver | 0 .00 RPM | 515 .37 RPM |
bodymap2_lung | 0 .00 RPM | 1395 .71 RPM |
bodymap2_lymph_node | 0 .00 RPM | 1623 .01 RPM |
bodymap2_ovary | 0 .00 RPM | 2926 .00 RPM |
bodymap2_prostate | 0 .00 RPM | 1872 .53 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 319 .11 RPM |
bodymap2_testis | 0 .00 RPM | 1379 .42 RPM |
bodymap2_thyroid | 0 .00 RPM | 1149 .27 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 1856 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2646 |
Gorilla gorilla | retro_ggor_2616 |
Pongo abelii | retro_pabe_3170 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |