RetrogeneDB ID: | retro_meug_1856 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold66492:8437..9184(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSMEUG00000009789 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 82.73 % |
Parental protein coverage: | 61.94 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | KYCQVIRVIAHTQMRLLPLRQKKSHLMEIQVNGGSVAEKLDWAREKLEQQVPVSTVFGQDEMIDVIGVTK |
KY.QVIRVIAHTQ..LLPLRQKKSHLMEI.VNGGS.AEKLDW..EKLEQQVPVST.FGQDEMID.IG..K | |
Retrocopy | KYYQVIRVIAHTQKILLPLRQKKSHLMEI*VNGGSMAEKLDWTHEKLEQQVPVSTKFGQDEMIDFIGMMK |
Parental | GKGYKXXXSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGFQIK |
G.GYK...S.WHTKKLP.KTH.GL.KVAC.GAWHPA.VAFSVA.AG...YHH.TEINKKIYKIGQG.QIK | |
Retrocopy | GRGYKGATSHWHTKKLPPKTHQGLHKVACVGAWHPAQVAFSVAQAGKMDYHHHTEINKKIYKIGQGYQIK |
Parental | DGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKID |
DGKLIKNNASTDYDLS.KSINPLGGFVHY.EVTNDFIML.GC.VGTK.RVL.L..SL.VQTKR.ALEKID | |
Retrocopy | DGKLIKNNASTDYDLSNKSINPLGGFVHYSEVTNDFIMLEGCIVGTKNRVLIL*RSLPVQTKRCALEKID |
Parental | LKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRVAKEEVA |
LKFIDTTSKFGH..FQTVEEKKAFMG.LKKD.VAKE..A | |
Retrocopy | LKFIDTTSKFGHD*FQTVEEKKAFMGSLKKDQVAKEKAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |