RetrogeneDB ID: | retro_meug_898 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold22339:2987..3626(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSMEUG00000009789 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 91.08 % |
Parental protein coverage: | 52.99 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | AEKLDWAREKLEQQVPVSTVFGQDEMIDVIGVTKGKGYKXXXSRWHTKKLPRKTHRGLRKVACIGAWHPA |
AEKLDWAREKLEQQVPVST.FGQDEMIDVIGV.KGKGYK...S.WHTKKLP.KTHRGL.KVACIG.WHPA | |
Retrocopy | AEKLDWAREKLEQQVPVSTMFGQDEMIDVIGVAKGKGYKGVTSCWHTKKLP*KTHRGLCKVACIGGWHPA |
Parental | RVAFSVARAGQKGYHHRTEINKKIYKIGQGFQIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDF |
RVAFSVARAGQKGYHHRTEINKKIYKIGQGFQIKDGKLIK.NASTDYDLSDKSINPLGGFVHYGEV.NDF | |
Retrocopy | RVAFSVARAGQKGYHHRTEINKKIYKIGQGFQIKDGKLIKTNASTDYDLSDKSINPLGGFVHYGEVANDF |
Parental | IMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRVAKE |
IMLKGCVVGTKKRVLTLRKSLLVQTKR.ALE.IDLKFIDT.SK.GHG.FQTVEEKKAFMGPLKKD.V.KE | |
Retrocopy | IMLKGCVVGTKKRVLTLRKSLLVQTKRCALEEIDLKFIDTISKLGHGQFQTVEEKKAFMGPLKKD*VVKE |
Parental | EVA |
E.A | |
Retrocopy | EAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |