RetrogeneDB ID: | retro_meug_2150 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold9540:23928..24654(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSMEUG00000009789 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 89.67 % |
Parental protein coverage: | 60.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVDRPGSKVNKKE |
SH.KFSAPRHGSLGFLP.KRSSRH.GKVKSFPKDDPSKPI.LTAFLGY.AGM.HIVREVDRPGSKVNKKE | |
Retrocopy | SH*KFSAPRHGSLGFLPQKRSSRHWGKVKSFPKDDPSKPIYLTAFLGYRAGMIHIVREVDRPGSKVNKKE |
Parental | VVEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDED |
VVEAVTIVE.PPMVIVGIVGYVQTPRGLRSFKTIFAEHISDE.KR.FYKNWHKSKKKAFTKY.KKWQDED | |
Retrocopy | VVEAVTIVEMPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDEYKRWFYKNWHKSKKKAFTKYFKKWQDED |
Parental | GKKQLEKDLSSMKKYCQVIRVIAHTQMRLLPLRQKKSHLMEIQVNGGSVAEKLDWAREKLEQQVPVSTVF |
GKK.LEKDLSSMKKYCQVI...AHTQM.LLPLRQKKSHLMEIQVNGGSVAEKLDWAREKLEQQV..STVF | |
Retrocopy | GKKHLEKDLSSMKKYCQVILITAHTQMHLLPLRQKKSHLMEIQVNGGSVAEKLDWAREKLEQQVLMSTVF |
Parental | GQDEMIDVIGVTKGKGYKXXXSRWHTKKLPRK |
GQDE.IDVIGV.KGKGYK...S.WHTKKL..K | |
Retrocopy | GQDEIIDVIGVMKGKGYKGVTSCWHTKKLLEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |