RetrogeneDB ID: | retro_eeur_557 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_344028:49926..50680(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSEEUG00000014661 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 82.94 % |
Parental protein coverage: | 62.28 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSHRKFSAPRHRSLGFLPRKRSSRHRGKVKKFPKDDPSKPVHLTAFLGYXXXXXXXXXXXXXXXXXVNKK |
MSHRKFSAPRH.SLGFLPRKRSSRH.GKVK..PKDD.SKPVHLTAFLGY.................VN.K | |
Retrocopy | MSHRKFSAPRHGSLGFLPRKRSSRHLGKVKSSPKDDFSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNRK |
Parental | EVVEAVTIVETPPMVVVGIVGYVE-TPRGLRSFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQD |
EVVEAVTIVETPPMVVVGIVGYVE.TPRGLR.FKTIFAEHISDECKR.FYKNWHKSKKKAFTKYCKKWQD | |
Retrocopy | EVVEAVTIVETPPMVVVGIVGYVE>TPRGLRTFKTIFAEHISDECKRPFYKNWHKSKKKAFTKYCKKWQD |
Parental | EDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQ |
EDG.KQLEKDFS.MKKYCQVI.VIAHTQMRLLPL.QKKAHLMEIQV.GGTVAEKLDWA.ERLEQ.VPVNQ | |
Retrocopy | EDGRKQLEKDFSNMKKYCQVIHVIAHTQMRLLPLHQKKAHLMEIQVKGGTVAEKLDWACERLEQ*VPVNQ |
Parental | VFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKV |
VFGQDEMI.VIGVTKGKG.KGVTSRWHTKKL.......LR.V | |
Retrocopy | VFGQDEMIVVIGVTKGKG*KGVTSRWHTKKLQEQYFY*LRSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 60 .91 RPM | 353 .23 RPM |
SRP017611_kidney | 151 .72 RPM | 936 .38 RPM |
SRP017611_liver | 89 .23 RPM | 581 .20 RPM |