RetrogeneDB ID: | retro_meug_1554 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold45236:11833..13032(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSMEUG00000009789 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 84.62 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVDRPGSKVNKKE |
SH.KFSAPR...LGFLP.KRS.RH.GKVKSFPKDDPSKPIHLTAFLGYKAGMTHIV.EVDR..SKVNKKE | |
Retrocopy | SHWKFSAPRQRCLGFLP*KRSGRHWGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVGEVDRSSSKVNKKE |
Parental | VVEAVTIVETPPMVIVGIV-GYVQTPRGLRSFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDE |
.VEAVTI.E...MVIVGI..GYVQTPRGL.SFKTIFAEHISDE.KR.F..NWHK..KKAFTKY..KWQDE | |
Retrocopy | MVEAVTIMEMTSMVIVGIM<GYVQTPRGLWSFKTIFAEHISDERKR*FHNNWHK--KKAFTKYYRKWQDE |
Parental | DGKKQLEKDLSSMKKYCQVIRVIAHTQMRLLPLRQKKSHLMEIQVNGGSVAEKLDWAREKLEQQVPVSTV |
DGKKQLEKDLSSMKKYCQVIRVIAHTQM.LLPLRQKKSHLMEIQVNG.S..EKLDWAREKLEQQVPVSTV | |
Retrocopy | DGKKQLEKDLSSMKKYCQVIRVIAHTQMCLLPLRQKKSHLMEIQVNGSSMTEKLDWAREKLEQQVPVSTV |
Parental | FGQDEMIDVIGVTKGKGYKXXXSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI |
FGQDEM.DVIGV.KGKGYK...S.WHTKKLP.KT..GL.K.ACIGAWH.A..AFSVA.AGQKGYHHRTEI | |
Retrocopy | FGQDEMTDVIGVRKGKGYKDVTSCWHTKKLP*KTYQGLYKLACIGAWHSAQLAFSVAQAGQKGYHHRTEI |
Parental | NKKIYKIGQGFQIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKS |
NKKIY.IGQG.QIKDGKLIKNNASTDY.LS.K.INPLG.FVHYGEVTNDFIMLK.CVVGTKK.VLTL.KS | |
Retrocopy | NKKIYNIGQGYQIKDGKLIKNNASTDYNLSEKIINPLGAFVHYGEVTNDFIMLKDCVVGTKKHVLTLQKS |
Parental | LLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRVAKEEVA |
LLVQTKR..LEKIDLKFIDTTSKFGH..FQTVEEKKAFMG.LKKD.V.KEE.A | |
Retrocopy | LLVQTKRHSLEKIDLKFIDTTSKFGHVWFQTVEEKKAFMGSLKKD*VTKEEAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |