RetrogeneDB ID: | retro_meug_2151 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold9540:33446..34447(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSMEUG00000009789 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 88.66 % |
Parental protein coverage: | 83.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KEVVEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQD |
KEVVEAVTIVE.PPMVIVGIVGYVQTPRGLRSFKTIFAEHISDE.KR.FYKNWHKSKKKAFTKY.KKWQD | |
Retrocopy | KEVVEAVTIVEMPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDEYKRWFYKNWHKSKKKAFTKYFKKWQD |
Parental | EDGKKQLEKDLSSMKKYCQVIRVIAHTQMRLLPLRQKKSHLMEIQVNGGSVAEKLDWAREKLEQQVPVST |
EDGKK.LEKDLSSMKKYCQVI...AHTQM.LLPLRQKKSHLMEIQVNGGSVAEKLDWAREKLEQQV..ST | |
Retrocopy | EDGKKHLEKDLSSMKKYCQVILITAHTQMHLLPLRQKKSHLMEIQVNGGSVAEKLDWAREKLEQQVLMST |
Parental | VFGQDEMIDVIGVTKGKGYKXXXSRWHTKKLP-RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRT |
VFGQDE.IDVIGV.KGKGYK...S.WHTKKLP.RK.H.GLRKVACIGAWHP..VAFSVA.AGQKG.HHRT | |
Retrocopy | VFGQDEIIDVIGVMKGKGYKGVTSCWHTKKLP<RKAHQGLRKVACIGAWHPTWVAFSVAQAGQKGHHHRT |
Parental | EINKKIYKIGQGFQIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLR |
EINKKIYK...G.QIKDGKLIKNNASTDYDLS.KSINPLGGFVHY.EVTNDFIMLK.CV.GTKKRVLTLR | |
Retrocopy | EINKKIYKSSEGYQIKDGKLIKNNASTDYDLSNKSINPLGGFVHYSEVTNDFIMLKVCVAGTKKRVLTLR |
Parental | KSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRVAKEEVA |
KSLLVQTKRRALEKI.LKFIDTTSKFGHG.FQTVEEK.A.MGPLKKDRV.KEE.A | |
Retrocopy | KSLLVQTKRRALEKIHLKFIDTTSKFGHGQFQTVEEKNASMGPLKKDRVTKEETA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |