RetrogeneDB ID: | retro_meug_851 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold20745:19097..20301(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSMEUG00000009789 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 83.37 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPIHLTAFLGYKAGMTHIVREVDRPGSKVNKKE |
S..KFSAPRHGSLGFLP.KRS.R..GKVKSFPKDDPSKPIHLTAFLGYKA.MTHI..E.DRPGSKVNKKE | |
Retrocopy | SQQKFSAPRHGSLGFLPPKRSNRNQGKVKSFPKDDPSKPIHLTAFLGYKADMTHII*ELDRPGSKVNKKE |
Parental | VVEAVTIVETPPMVIVGIVGYVQTPRGLRSFKTIFAEHISDEC-KRRFYKNWHKSKKKAFTKYCKKWQDE |
VVEAVTIVE.PP.VIVGIVGYVQTPRGLRSFKTIFAEHISDEC..R.........KK.AFTKY.KKW.DE | |
Retrocopy | VVEAVTIVEMPPTVIVGIVGYVQTPRGLRSFKTIFAEHISDEC>RRFYKNWHESKKK-AFTKYYKKW*DE |
Parental | DGKKQLEKDLSSMKKYCQVIRVIAHTQMRLLPLRQKKSHLMEIQVNGGSVAEKLDWAREKLEQQVPVSTV |
DGKKQLEKDLSSMKKYC.VIRVIA.TQM.LLPLRQKKSHLM.IQVNG.SVAEKLD.AREKLEQQVP.STV | |
Retrocopy | DGKKQLEKDLSSMKKYC*VIRVIARTQMCLLPLRQKKSHLMKIQVNGSSVAEKLDRAREKLEQQVPMSTV |
Parental | FGQDEMIDVIGVTKGKGYKXXXSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEI |
FGQD.MID..G..KGKGYK...S.WHTKKLP.K.HRGL.KVACIGAWHPAR..FSVA.AGQ.GYHHRTEI | |
Retrocopy | FGQDKMIDDVGIMKGKGYKGVTSCWHTKKLPQKIHRGLHKVACIGAWHPARITFSVA*AGQEGYHHRTEI |
Parental | NKKIYKIGQGFQIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKS |
NKKIYKIGQG..IKDGKLIKNNASTDYD.S.KSINPLGGF.HY.EVTNDFI.LK.CVVGTKK.VLTLRKS | |
Retrocopy | NKKIYKIGQGYKIKDGKLIKNNASTDYDQSHKSINPLGGFIHYSEVTNDFIVLKDCVVGTKKCVLTLRKS |
Parental | LLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRVAKEEVA |
LLVQTK...LEK.DLKFIDTTSKFGH...QTVEEKKAFM.PLKKDRVAKEE.A | |
Retrocopy | LLVQTKHPTLEKTDLKFIDTTSKFGHSLLQTVEEKKAFMRPLKKDRVAKEEAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |