RetrogeneDB ID: | retro_cfam_97 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 12:59069084..59070296(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000003564 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSCAFG00000001346 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris ribosomal protein L3 (RPL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001252159] |
Percent Identity: | 99.75 % |
Parental protein coverage: | 99.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKE |
SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKE | |
Retrocopy | SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDSSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKE |
Parental | VVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDD |
VVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDD | |
Retrocopy | VVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTIFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDD |
Parental | GKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVF |
GKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVF | |
Retrocopy | GKKQLEKDFNSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVNQVF |
Parental | GQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEIN |
GQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFS.ARAGQKGYHHRTEIN | |
Retrocopy | GQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSMARAGQKGYHHRTEIN |
Parental | KKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSL |
KKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSL | |
Retrocopy | KKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSL |
Parental | LVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA |
LVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA | |
Retrocopy | LVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 7 .43 RPM | 254 .13 RPM |
SRP017611_brain | 2 .70 RPM | 101 .23 RPM |
SRP017611_kidney | 22 .65 RPM | 674 .64 RPM |
SRP017611_liver | 9 .93 RPM | 279 .61 RPM |