RetrogeneDB ID: | retro_pabe_3696 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:121611986..121613074(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL3 | ||
Ensembl ID: | ENSPPYG00000011837 | ||
Aliases: | None | ||
Description: | ribosomal protein L3 [Source:HGNC Symbol;Acc:10332] |
Percent Identity: | 84.93 % |
Parental protein coverage: | 90.07 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVR-EVDRPGSKVNK |
.SHRKFSAPRHGSLGFLP.KR..RH.GKVKSFPKDDPSK.VHLTAFL.YK.G.THIVR.EV.RPGSKVN. | |
Retrocopy | ISHRKFSAPRHGSLGFLP*KRNCRHCGKVKSFPKDDPSKLVHLTAFLRYKVGVTHIVR>EVNRPGSKVNM |
Parental | KEVVEAVTIVET-PPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQ |
KEVVEAV.IVET.PPMVVVGIVGY.ET.RG..TFKT.FAEHIS.ECKRRFYKN.HKSKKK.FTKYCKKWQ | |
Retrocopy | KEVVEAVAIVET>PPMVVVGIVGYGETLRGIWTFKTIFAEHISSECKRRFYKN*HKSKKKPFTKYCKKWQ |
Parental | DEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPVN |
.EDGKKQ..KDFSSMKKYCQVIRVIAHTQM.LLPL.QK.AHLMEI.VN.GT.AEKLDWA..RLEQQVPVN | |
Retrocopy | KEDGKKQV*KDFSSMKKYCQVIRVIAHTQMCLLPLHQK-AHLMEI*VNRGTAAEKLDWAQKRLEQQVPVN |
Parental | QVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRT |
QVFGQDEMI.VIGVTKGKGYKGV.S.WHTKKLP.KTHRGL.KVAC.GAWH.A.VAFSVA.AGQKGYHH.T | |
Retrocopy | QVFGQDEMIKVIGVTKGKGYKGVPSCWHTKKLPHKTHRGLCKVACMGAWHLAHVAFSVAHAGQKGYHHGT |
Parental | EINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLR |
EINKKIYKIGQGY.I.D.KLIKNNAS.DYDLSDKSINPLGGFVH.G.VTNDFVMLKG.VVGTKK.VLTL. | |
Retrocopy | EINKKIYKIGQGYPITDSKLIKNNASIDYDLSDKSINPLGGFVHCGKVTNDFVMLKGYVVGTKKQVLTLC |
Parental | KSLLVQTKRRALEKI |
KSLLVQTK..ALEK. | |
Retrocopy | KSLLVQTKWQALEKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 169 .41 RPM |
SRP007412_cerebellum | 0 .00 RPM | 139 .11 RPM |
SRP007412_heart | 0 .03 RPM | 60 .51 RPM |
SRP007412_kidney | 0 .13 RPM | 379 .03 RPM |
SRP007412_liver | 0 .00 RPM | 256 .93 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4749 |
Pan troglodytes | retro_ptro_3163 |
Gorilla gorilla | retro_ggor_2955 |