RetrogeneDB ID: | retro_mmus_1113 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:65436598..65437143(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb1 | ||
Ensembl ID: | ENSMUSG00000066551 | ||
Aliases: | Hmgb1, DEF, HMG-1, Hmg1, SBP-1, amphoterin, p30 | ||
Description: | high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113] |
Percent Identity: | 85.03 % |
Parental protein coverage: | 85.58 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
.GKGDPKKPRGKM.SYAFFVQTC.EE.KKKHPDASVNFSEFSKKCSERWKT.SA.EKGKFEDM.KADK.. | |
Retrocopy | IGKGDPKKPRGKMASYAFFVQTCPEELKKKHPDASVNFSEFSKKCSERWKTISA*EKGKFEDMGKADKSP |
Parental | YER-EMKTYIPPK-GETKKKFKDPNAPKRPPSAFFLFCSEYRPK-IKGEHPGLSIGDVAKKLGEMWNNTA |
YER..MKTYIPPK.GETKKKFKDPNAPK.PPS......S...PK.IKGEHPGLSIGDVAKKLGEMWNNTA | |
Retrocopy | YER<KMKTYIPPK>GETKKKFKDPNAPKSPPSSYSVLSS--APK<IKGEHPGLSIGDVAKKLGEMWNNTA |
Parental | ADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKK |
.DDKQPYEKKAAKLKEKY.KDI.AYRAKGKPDA..KGVVKAEKSKKK | |
Retrocopy | VDDKQPYEKKAAKLKEKYKKDIPAYRAKGKPDAENKGVVKAEKSKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 25 .49 RPM |
SRP007412_heart | 0 .00 RPM | 35 .74 RPM |
SRP007412_kidney | 0 .00 RPM | 43 .37 RPM |
SRP007412_liver | 0 .00 RPM | 39 .30 RPM |
SRP007412_testis | 0 .00 RPM | 12 .44 RPM |