RetrogeneDB ID: | retro_ttru_757 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_3288:170610..171140(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSTTRG00000010327 | ||
Aliases: | None | ||
Description: | high mobility group box 1 [Source:HGNC Symbol;Acc:4983] |
Percent Identity: | 97.75 % |
Parental protein coverage: | 82.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR | |
Retrocopy | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
Parental | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIK-GEHPGLSIGDVAKKLGEMWNNTAAD |
YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIK.GE.PGLSIGDVAKKLGEMWNNTAAD | |
Retrocopy | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIK<GEYPGLSIGDVAKKLGEMWNNTAAD |
Parental | DKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVK |
DKQPY.KKAAKLKEKYEKDIAAYRAKGKPDAAKKGVV. | |
Retrocopy | DKQPYQKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |