RetrogeneDB ID: | retro_ttru_102 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1217:181935..182518(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSTTRG00000010327 | ||
Aliases: | None | ||
Description: | high mobility group box 1 [Source:HGNC Symbol;Acc:4983] |
Percent Identity: | 89.29 % |
Parental protein coverage: | 90.7 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKGDPKKPRG.MSSYA.FVQTCR..HK.KHPDASV.FSEFSKKCSERWKT.SAKEKGKFEDMAKADKAR | |
Retrocopy | MGKGDPKKPRGEMSSYALFVQTCRQKHKRKHPDASVSFSEFSKKCSERWKTTSAKEKGKFEDMAKADKAR |
Parental | YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD |
YERE.KTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS.GDVAKKLGEMW.NTAADD | |
Retrocopy | YERERKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSMGDVAKKLGEMWTNTAADD |
Parental | KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKK-GVVKAEKSKKKKEEEEDEEDEE |
KQP.E..AAKLKEKYEK.IAA..AKGKPDAAK..GVVKAEKSKKKKEEEED..D.E | |
Retrocopy | KQP*E-AAAKLKEKYEKEIAANGAKGKPDAAKR>GVVKAEKSKKKKEEEEDDDDDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |