RetrogeneDB ID: | retro_mmus_1423 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 15:97302450..97302974(-) | ||
Located in intron of: | ENSMUSG00000044250 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Hmgb1 | ||
Ensembl ID: | ENSMUSG00000066551 | ||
Aliases: | Hmgb1, DEF, HMG-1, Hmg1, SBP-1, amphoterin, p30 | ||
Description: | high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113] |
Percent Identity: | 90. % |
Parental protein coverage: | 82.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG-KFEDMAKADKA |
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSE.SKKCSERWKTMSAK.KG.KFE.MAKADKA | |
Retrocopy | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSELSKKCSERWKTMSAK-KG>KFEKMAKADKA |
Parental | RYEREMKTYIP-PK-GETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA |
.YEREMKTYIP.P..GETK.KFKDPNAPKRPPSA.FLFCSEYRP.IKGEHPGLSIG..AKKLGEMWNNTA | |
Retrocopy | HYEREMKTYIPTPQ>GETKEKFKDPNAPKRPPSA-FLFCSEYRPQIKGEHPGLSIGGAAKKLGEMWNNTA |
Parental | ADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVK |
.DDKQP.EKKAAKLK.K.EKDIAAYRAKGKPD.AKKGVVK | |
Retrocopy | VDDKQPCEKKAAKLK-K*EKDIAAYRAKGKPD-AKKGVVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 36 .52 RPM |
SRP007412_cerebellum | 0 .00 RPM | 25 .49 RPM |
SRP007412_heart | 0 .03 RPM | 35 .74 RPM |
SRP007412_kidney | 0 .06 RPM | 43 .37 RPM |
SRP007412_liver | 0 .08 RPM | 39 .30 RPM |
SRP007412_testis | 0 .05 RPM | 12 .44 RPM |