RetrogeneDB ID: | retro_nleu_1393 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397292.1:1928034..1928562(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSNLEG00000000720 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.56 % |
Parental protein coverage: | 82.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
MGKGD.KKPRGKM.SY.F.VQTC.EEHKKKHPDASV.FSEFSKKCS.R.KTMSAKEKG.FE.MA.A.KAR | |
Retrocopy | MGKGDLKKPRGKMPSYVFCVQTCPEEHKKKHPDASVDFSEFSKKCSVRGKTMSAKEKGQFEAMARAEKAR |
Parental | YEREMKTYIPPKGETKKKFKDPNAPK-RPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD |
YEREMKTYIPPKGETK.....P..P..R.PSAFFLFCS...PK...EH.GLSIGD.AKKLG.MWNNTAAD | |
Retrocopy | YEREMKTYIPPKGETK-SLRIPMHPR<RSPSAFFLFCSACGPKVRREHSGLSIGDAAKKLGGMWNNTAAD |
Parental | DKQPYEKKAAKLKEK-YEKDIAAYRAKGKPDAAKKGVVKA |
DKQP..K...K...K.Y.KDIA.Y.AKGK.DAAKKGVVKA | |
Retrocopy | DKQP-*KEGCKAEGK>YRKDIATY*AKGKSDAAKKGVVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |