RetrogeneDB ID: | retro_nleu_2708 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397404.1:2102294..2102832(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSNLEG00000000720 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.69 % |
Parental protein coverage: | 83.72 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKT-Y |
R....SYA.FVQT..EEHKK.HPDASVNFSEF.KKCSERWKT.SAK.K.KFED....D.A.YE.EMK..Y | |
Retrocopy | RNVITSYAIFVQTSWEEHKKQHPDASVNFSEFPKKCSERWKTLSAKKK*KFEDSVRVDMAHYETEMKN>Y |
Parental | IPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA |
IPPK.ETK.KFKDPNAPK.PP.AFF.F.SE..PKIK.EHPGLSI.D.AKKLGEMWN.TA.DDK.PYEKKA | |
Retrocopy | IPPKTETKMKFKDPNAPKSPPLAFFMFFSEDCPKIK-EHPGLSISDIAKKLGEMWNYTAEDDKHPYEKKA |
Parental | AKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEE |
.KLKEKYEKDIAA...KGKPDAAKKG..K.EKSKKKKEE.. | |
Retrocopy | VKLKEKYEKDIAAFGGKGKPDAAKKGAIKSEKSKKKKEEDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |