RetrogeneDB ID: | retro_nleu_301 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397263.1:5238341..5238864(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSNLEG00000000720 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.68 % |
Parental protein coverage: | 82.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR |
M..GDPKKPRGKMS.YAFF.QTC.EEHKKKHPDA.VNFS.FSKKC.ERWKTMSAKEKGKFED.AKADKAR | |
Retrocopy | MSEGDPKKPRGKMSPYAFFAQTCQEEHKKKHPDA*VNFSAFSKKCLERWKTMSAKEKGKFEDTAKADKAR |
Parental | YEREMKTYIPPKGETKKKFKDPNAPKRPPSA-FFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD |
.EREMKT.IP.KGET.KK.KDP.APKRPPSA.FFLFCSEY.PK....H.GLSIGD.AKKLGEM.N.TAA. | |
Retrocopy | NEREMKTCIPSKGETRKKLKDPEAPKRPPSA>FFLFCSEYCPK----HTGLSIGDAAKKLGEMRNDTAAG |
Parental | DKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKA |
DKQP.EKKA.KLKEK.EK..AAYRAKGKPDAAKKGVVKA | |
Retrocopy | DKQP*EKKAEKLKEKCEKGLAAYRAKGKPDAAKKGVVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |