RetrogeneDB ID: | retro_nleu_2160 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397333.1:453235..453743(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSNLEG00000000720 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.18 % |
Parental protein coverage: | 79.07 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSA-KEKGKFEDMAKADKA |
MGK.DPKKPRGKMSSYAFFVQT..EEHKKK..DASV.FSEFSK.CSERWKTMS..K.K............ | |
Retrocopy | MGKRDPKKPRGKMSSYAFFVQTYQEEHKKKQQDASVSFSEFSKNCSERWKTMSV>KRKENLKTWQRQTRP |
Parental | RYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD |
......K.YI..KGETKKKFKD.NAPK.PPSAF.LFCS.Y.PKIKGEHP..S..D..KKLG..WNNTAAD | |
Retrocopy | VMKKK*K-YIATKGETKKKFKDLNAPKMPPSAFCLFCSDYHPKIKGEHPVQSTSDTVKKLGGKWNNTAAD |
Parental | DKQPYEKKAAKLKEKYEKDIAAYRAKGKPDA |
..QP.EKKAAK.KEKY.KDIAAY.A.GKPDA | |
Retrocopy | EMQPHEKKAAKPKEKYKKDIAAYQAEGKPDA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |