RetrogeneDB ID: | retro_ttru_119 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1291:433305..433834(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB1 | ||
Ensembl ID: | ENSTTRG00000010327 | ||
Aliases: | None | ||
Description: | high mobility group box 1 [Source:HGNC Symbol;Acc:4983] |
Percent Identity: | 81.67 % |
Parental protein coverage: | 82.79 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MGKGDPKKPRGKMSSYAFFVQ-TCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKA |
MGKGDPKKPRG.MSSYAFF...TC.E.HKKKH.D..VNFSEFS.KCSERWKTMSAKEKGKF.DM.KADKA | |
Retrocopy | MGKGDPKKPRGQMSSYAFFGK<TC*EGHKKKHSDVLVNFSEFSNKCSERWKTMSAKEKGKFNDMVKADKA |
Parental | RYEREMKTYIPPKG-ETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAA |
.YER.MKT.IPPKG.ET.KKFKDPNAPKR.PSAFFLFC.EY.PKIKGEHPGLSIGDVAKKLGEMW.NTAA | |
Retrocopy | CYERKMKTSIPPKG<ETQKKFKDPNAPKRSPSAFFLFCPEYCPKIKGEHPGLSIGDVAKKLGEMWSNTAA |
Parental | DDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKA |
D.KQ.YE.K..KLKE.Y.K.IAA..AKGKPDAA.KG.VKA | |
Retrocopy | DEKQLYE-KFPKLKEEYRKYIAA*GAKGKPDAATKGIVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |