Parental gene:

Hmgb1, ENSMUSG00000066551

Aliases:Hmgb1, DEF, HMG-1, Hmg1, SBP-1, amphoterin, p30
Description:high mobility group box 1 [Source:MGI Symbol;Acc:MGI:96113]
Organism:Mouse (Mus musculus)
Coordinates:5:149046701..149053513(-)


>ENSMUSG00000066551
ATGGGCAAAGGAGATCCTAAAAAGCCGAGAGGCAAAATGTCCTCATATGCATTCTTTGTGCAAACTTGCCGGGAGGAGCA
CAAGAAGAAGCACCCGGATGCTTCTGTCAACTTCTCAGAGTTCTCCAAGAAGTGCTCAGAGAGGTGGAAGACCATGTCTG
CTAAAGAAAAGGGGAAATTTGAAGATATGGCAAAGGCTGACAAGGCTCGTTATGAAAGAGAAATGAAAACCTACATCCCC
CCCAAAGGGGAGACCAAAAAGAAGTTCAAGGACCCCAATGCACCCAAGAGGCCTCCTTCGGCCTTCTTCTTGTTCTGTTC
TGAGTACCGCCCCAAAATCAAAGGCGAGCATCCTGGCTTATCCATTGGTGATGTTGCAAAGAAACTAGGAGAGATGTGGA
ACAACACTGCAGCAGATGACAAGCAGCCCTATGAGAAGAAAGCTGCCAAGCTGAAGGAGAAGTATGAGAAGGATATTGCT
GCCTACAGAGCTAAAGGAAAACCTGATGCAGCGAAAAAGGGGGTGGTCAAGGCTGAAAAGAGCAAGAAAAAGAAGGAAGA
GGAAGATGATGAGGAGGATGAAGAGGATGAGGAAGAGGAGGAAGAAGAGGAAGACGAAGATGAAGAAGAAGATGATGATG
ATGAATAA

Library Parental gene expression (RPM)
SRP007412_brain 36 .52 RPM
SRP007412_cerebellum 25 .49 RPM
SRP007412_heart 35 .74 RPM
SRP007412_kidney 43 .37 RPM
SRP007412_liver 39 .30 RPM
SRP007412_testis 12 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000006597 possible_ortholog 13 retrogenes
retro_cfam_1088, retro_cfam_1102, retro_cfam_1387, retro_cfam_1628, retro_cfam_1765, retro_cfam_1831, retro_cfam_1980, retro_cfam_242, retro_cfam_280, retro_cfam_467, retro_cfam_495, retro_cfam_521, retro_cfam_528,
Equus caballus ENSECAG00000008439 ortholog_one2one 2 retrogenes
retro_ecab_101, retro_ecab_64,
Felis catus ENSFCAG00000000200 ortholog_one2one 10 retrogenes
retro_fcat_1046, retro_fcat_1271, retro_fcat_1306, retro_fcat_1330, retro_fcat_1759, retro_fcat_693, retro_fcat_728, retro_fcat_762, retro_fcat_770, retro_fcat_821,
Homo sapiens ENSG00000189403 ortholog_one2one 37 retrogenes
retro_hsap_1230, retro_hsap_1357, retro_hsap_1504, retro_hsap_1589, retro_hsap_1608, retro_hsap_176, retro_hsap_1832, retro_hsap_1954, retro_hsap_2103, retro_hsap_2192, retro_hsap_2219, retro_hsap_2228, retro_hsap_2340, retro_hsap_2490, retro_hsap_2552, retro_hsap_2613, retro_hsap_2660, retro_hsap_2858, retro_hsap_2947, retro_hsap_3317, retro_hsap_3340, retro_hsap_3592, retro_hsap_3615, retro_hsap_3666, retro_hsap_382, retro_hsap_3942, retro_hsap_4003, retro_hsap_4109, retro_hsap_4309, retro_hsap_4669, retro_hsap_470, retro_hsap_4738, retro_hsap_4832, retro_hsap_525, retro_hsap_554, retro_hsap_758, retro_hsap_933,
Gorilla gorilla ENSGGOG00000026764 possible_ortholog 23 retrogenes
retro_ggor_1057, retro_ggor_1212, retro_ggor_1421, retro_ggor_1596, retro_ggor_1637, retro_ggor_1662, retro_ggor_1735, retro_ggor_1777, retro_ggor_1856, retro_ggor_1951, retro_ggor_1977, retro_ggor_213, retro_ggor_2422, retro_ggor_2441, retro_ggor_2478, retro_ggor_259, retro_ggor_2897, retro_ggor_3013, retro_ggor_388, retro_ggor_448, retro_ggor_483, retro_ggor_753, retro_ggor_964,
Macropus eugenii ENSMEUG00000001380 possible_ortholog 2 retrogenes
retro_meug_1591, retro_meug_825,
Microcebus murinus ENSMICG00000007144 ortholog_one2one 7 retrogenes
retro_mmur_11, retro_mmur_1452, retro_mmur_154, retro_mmur_182, retro_mmur_40, retro_mmur_428, retro_mmur_664,
Macaca mulatta ENSMMUG00000023399 possible_ortholog 3 retrogenes
retro_mmul_2079, retro_mmul_320, retro_mmul_385,
Monodelphis domestica ENSMODG00000009238 possible_ortholog 14 retrogenes
retro_mdom_1088, retro_mdom_1144, retro_mdom_1228, retro_mdom_1689, retro_mdom_1727, retro_mdom_1819, retro_mdom_2007, retro_mdom_2024, retro_mdom_3, retro_mdom_434, retro_mdom_548, retro_mdom_72, retro_mdom_760, retro_mdom_958,
Mus musculus ENSMUSG00000015217 other_paralog 1 retrogene
retro_mmus_273,
Mus musculus ENSMUSG00000054717 other_paralog 23 retrogenes
retro_mmus_1477, retro_mmus_1745, retro_mmus_1974, retro_mmus_1975, retro_mmus_2269, retro_mmus_2527, retro_mmus_2528, retro_mmus_2529, retro_mmus_2530, retro_mmus_2531, retro_mmus_2843, retro_mmus_2884, retro_mmus_3248, retro_mmus_3426, retro_mmus_461, retro_mmus_626, retro_mmus_642, retro_mmus_796, retro_mmus_861, retro_mmus_901, retro_mmus_902, retro_mmus_904, retro_mmus_905,
Nomascus leucogenys ENSNLEG00000000720 ortholog_one2one 33 retrogenes
retro_nleu_1148, retro_nleu_1165, retro_nleu_1241, retro_nleu_1271, retro_nleu_1393, retro_nleu_1461, retro_nleu_1633, retro_nleu_1746, retro_nleu_1932, retro_nleu_2160, retro_nleu_2210, retro_nleu_2377, retro_nleu_2512, retro_nleu_2517, retro_nleu_2637, retro_nleu_2681, retro_nleu_2708, retro_nleu_2752, retro_nleu_278, retro_nleu_2798, retro_nleu_2859, retro_nleu_292, retro_nleu_301, retro_nleu_322, retro_nleu_345, retro_nleu_393, retro_nleu_520, retro_nleu_576, retro_nleu_602, retro_nleu_875, retro_nleu_885, retro_nleu_968, retro_nleu_984,
Rattus norvegicus ENSRNOG00000029813 possible_ortholog 1 retrogene
retro_rnor_421,
Sorex araneus ENSSARG00000004470 ortholog_one2one 14 retrogenes
retro_sara_131, retro_sara_182, retro_sara_259, retro_sara_293, retro_sara_302, retro_sara_342, retro_sara_378, retro_sara_402, retro_sara_47, retro_sara_564, retro_sara_576, retro_sara_613, retro_sara_655, retro_sara_765,
Sus scrofa ENSSSCG00000009327 ortholog_one2one 3 retrogenes
retro_sscr_1222, retro_sscr_304, retro_sscr_649,
Tursiops truncatus ENSTTRG00000010327 ortholog_one2one 8 retrogenes
retro_ttru_102, retro_ttru_1143, retro_ttru_119, retro_ttru_1382, retro_ttru_256, retro_ttru_723, retro_ttru_757, retro_ttru_956,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_292 82.64 55.81
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2. retro_mmus_303 81.38 84.65
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3. retro_mmus_319 98.88 83.26
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4. retro_mmus_359 93.82 81.86
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5. retro_mmus_418 95.51 81.40
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6. retro_mmus_515 87.80 74.88
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7. retro_mmus_530 59.77 78.14
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8. retro_mmus_574 83.74 56.74
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9. retro_mmus_599 73.74 89.77
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10. retro_mmus_618 85.56 86.05
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11. retro_mmus_623 90.16 83.26
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12. retro_mmus_624 89.44 82.79
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13. retro_mmus_634 84.49 84.19
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14. retro_mmus_704 87.22 61.40
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15. retro_mmus_705 87.20 97.60
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16. retro_mmus_785 92.78 83.26
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17. retro_mmus_813 98.88 82.79
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18. retro_mmus_839 90.48 67.91
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19. retro_mmus_855 88.57 81.40
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20. retro_mmus_881 95.59 62.79
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21. retro_mmus_903 50.35 64.19
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22. retro_mmus_906 51.06 85.58
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23. retro_mmus_930 88.40 82.79
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24. retro_mmus_965 55.38 59.53
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25. retro_mmus_981 92.82 83.72
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26. retro_mmus_1025 85.00 82.33
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27. retro_mmus_1037 91.07 52.09
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28. retro_mmus_1047 72.73 69.77
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29. retro_mmus_1065 85.38 59.53
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30. retro_mmus_1094 91.85 61.86
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31. retro_mmus_1112 85.41 84.19
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32. retro_mmus_1113 85.03 85.58
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33. retro_mmus_1114 83.15 81.86
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34. retro_mmus_1115 84.70 82.79
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35. retro_mmus_1128 94.44 83.26
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36. retro_mmus_1135 70.69 91.20
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37. retro_mmus_1140 97.19 82.79
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38. retro_mmus_1178 79.44 83.26
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39. retro_mmus_1181 79.35 72.09
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40. retro_mmus_1209 88.08 69.30
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41. retro_mmus_1284 80.90 82.33
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42. retro_mmus_1302 87.91 83.26
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43. retro_mmus_1351 93.37 82.79
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44. retro_mmus_1407 100.00 83.26
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45. retro_mmus_1423 90.00 82.33
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46. retro_mmus_1508 95.53 82.79
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47. retro_mmus_1553 86.89 84.65
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48. retro_mmus_1554 80.11 83.26
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49. retro_mmus_1584 66.95 53.95
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50. retro_mmus_1672 94.48 83.26
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51. retro_mmus_1705 79.51 56.28
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52. retro_mmus_1706 89.27 80.93
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53. retro_mmus_1712 85.25 84.65
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54. retro_mmus_1716 91.26 84.19
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55. retro_mmus_1725 64.12 78.60
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56. retro_mmus_1775 91.06 82.33
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57. retro_mmus_1794 95.53 83.26
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58. retro_mmus_1800 84.32 84.65
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59. retro_mmus_1822 99.44 82.79
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60. retro_mmus_1845 97.22 83.26
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61. retro_mmus_1871 79.89 83.26
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62. retro_mmus_1989 73.53 93.95
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63. retro_mmus_2015 87.98 84.19
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64. retro_mmus_2077 90.81 85.12
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65. retro_mmus_2080 100.00 83.26
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66. retro_mmus_2096 85.83 55.35
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67. retro_mmus_2191 97.78 83.26
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68. retro_mmus_2194 54.55 73.02
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69. retro_mmus_2199 78.95 86.05
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70. retro_mmus_2209 87.50 84.65
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71. retro_mmus_2224 97.21 82.79
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72. retro_mmus_2229 94.48 83.26
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73. retro_mmus_2280 93.41 82.79
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74. retro_mmus_2300 82.12 81.40
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75. retro_mmus_2324 82.70 84.65
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76. retro_mmus_2404 81.08 85.58
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77. retro_mmus_2407 80.43 83.26
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78. retro_mmus_2409 79.39 60.00
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79. retro_mmus_2414 83.33 82.79
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80. retro_mmus_2420 83.15 84.65
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81. retro_mmus_2425 81.92 81.40
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82. retro_mmus_2467 79.78 82.79
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83. retro_mmus_2469 86.74 83.26
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84. retro_mmus_2524 92.70 82.33
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85. retro_mmus_2532 81.92 81.40
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86. retro_mmus_2627 72.99 79.07
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87. retro_mmus_2670 91.26 84.65
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88. retro_mmus_2682 83.52 83.26
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89. retro_mmus_2702 89.63 62.79
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90. retro_mmus_2719 91.06 82.33
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91. retro_mmus_2754 66.49 84.65
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92. retro_mmus_2789 95.63 84.19
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93. retro_mmus_2815 75.65 52.09
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94. retro_mmus_2823 89.56 83.26
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95. retro_mmus_2866 84.83 81.86
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96. retro_mmus_2877 86.53 88.37
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97. retro_mmus_2886 84.30 96.00
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98. retro_mmus_2923 98.32 83.26
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99. retro_mmus_2936 77.54 86.05
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100. retro_mmus_2940 91.43 80.47
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101. retro_mmus_2954 90.22 84.65
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102. retro_mmus_2965 91.62 82.79
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103. retro_mmus_2977 89.50 83.26
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104. retro_mmus_3046 86.59 82.33
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105. retro_mmus_3056 93.05 85.58
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106. retro_mmus_3059 92.22 83.26
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107. retro_mmus_3067 91.80 84.65
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108. retro_mmus_3070 65.79 69.77
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109. retro_mmus_3075 83.98 82.79
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110. retro_mmus_3102 91.84 67.44
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111. retro_mmus_3106 96.58 67.91
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112. retro_mmus_3121 93.26 82.79
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113. retro_mmus_3169 74.86 79.53
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114. retro_mmus_3175 58.87 63.72
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115. retro_mmus_3190 82.95 80.93
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116. retro_mmus_3199 86.29 80.93
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117. retro_mmus_3207 89.17 92.80
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118. retro_mmus_3239 94.44 82.79
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119. retro_mmus_3289 87.27 50.70
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120. retro_mmus_3322 84.70 83.26
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121. retro_mmus_3353 94.93 63.72
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122. retro_mmus_3375 79.10 59.07
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123. retro_mmus_3476 86.11 83.26
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124. retro_mmus_3494 88.37 58.60
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125. retro_mmus_3533 99.44 83.26
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126. retro_mmus_3612 74.59 83.72
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127. retro_mmus_3676 74.42 59.53
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128. retro_mmus_3692 86.74 83.26
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129. retro_mmus_3715 90.91 71.63
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Download FASTA sequences of all ENSMUSG00000066551 retrocopies