RetrogeneDB ID: | retro_ptro_2622 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 7:49946889..49947619(-) | ||
Located in intron of: | ENSPTRG00000019192 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSPTRG00000018175 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.06 % |
Parental protein coverage: | 99.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | EQEQRKIPLVPENLLKKRKAYQALKATQAKQALLAKKEQKKGKGLRF-KRLESFLHDSWRQKRDKVRLRR |
EQEQRKIPLVPENLLKKRKAYQ.LKATQAKQ.LLAKKEQ.KGKGL...KRLESFL.D.W.QKRDK.RLRR | |
Retrocopy | EQEQRKIPLVPENLLKKRKAYQVLKATQAKQTLLAKKEQRKGKGLKL<KRLESFLYDYWWQKRDKMRLRR |
Parental | LEVKPHALELPDK-HSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTW |
LEVKPHALELPD..HSLAF.VRIERI.G.SLLVQRT.ARLRLKKIFSGVFVKVTPQNLKML.IVE.YV.W | |
Retrocopy | LEVKPHALELPDN<HSLAFIVRIERINGMSLLVQRTMARLRLKKIFSGVFVKVTPQNLKMLPIVETYVIW |
Parental | GFPNLKSVRELILKRGQAKVKNKTIPLTDNTVI-EEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLHPF |
.FP.LKS..ELILK.G.AKVKNKTIP.TDNTV..EEH.G.FGVICLEDLIHEIAF..KHFQEISWFL.PF | |
Retrocopy | VFPHLKSAWELILKCG*AKVKNKTIPQTDNTVM<EEHQGNFGVICLEDLIHEIAFLDKHFQEISWFLRPF |
Parental | HLSVARHATKNRVGFLKEMG-TPGYRGERINQLIRQLN |
H.SVA..AT.NRVGFLKEMG..PG.RGE.INQLI.QLN | |
Retrocopy | HFSVAHLATTNRVGFLKEMG>PPGCRGEHINQLIHQLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .07 RPM | 15 .94 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .15 RPM |
SRP007412_heart | 0 .03 RPM | 6 .56 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .80 RPM |
SRP007412_liver | 0 .00 RPM | 6 .84 RPM |
SRP007412_testis | 0 .00 RPM | 2 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3846 |
Gorilla gorilla | retro_ggor_2591 |
Pongo abelii | retro_pabe_3053 |