RetrogeneDB ID: | retro_sara_211 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | GeneScaffold_7289:51523..51947(+) | ||
Located in intron of: | ENSSARG00000012852 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSSARG00000005286 | ||
Aliases: | None | ||
Description: | ribosomal protein L7-like 1 [Source:HGNC Symbol;Acc:21370] |
Percent Identity: | 59.03 % |
Parental protein coverage: | 57.55 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | RLEVKPHGLEAPDNHSLAFVVRIERVQG-VSPQVRQTISRLRLKKIFSGVFVNVTPHTIRMLRTVDPYVT |
RL.VKPHGLE..DNHSLAF.V.I.R..G.VS.Q...T..R.RL.KIF.GV.V.VTPHT.R.L.TV...V. | |
Retrocopy | RLQVKPHGLEMQDNHSLAFMVCIQRISG<VSLQIQETTARIRLIKIFNGVIVKVTPHTSRLLCTVHT*VI |
Parental | WGFPNLKSVRELILKRGQAKVNNKVIPLTDNTVIEEH-LGKFDVICLEDLIHEIAFPGKHFQ-AISAFLC |
W.FPN..S..E.ILK.G..K..N..I.L.DN...E....GKFDVIC.EDLI..IAF.GKHFQ.AIS...C | |
Retrocopy | WKFPNM*SLWEHILKYGEVKLKNVIILLMDNMMTERY>QGKFDVICPEDLIYKIAFLGKHFQ>AISRLWC |
Parental | PFQL |
PF.. | |
Retrocopy | PFRV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |