RetrogeneDB - Parental gene ENSSTOG00000009841 details

							
>ENSSTOG00000009841
ATGGCGGAGGAAGAGCAAAGAAAAAAGATCCCTTTGGTTCCAGAAAATCTCCTGAAAAAGAGGAAGGCTTATCAGGCCCT

CAAAGCTACCCAAGCAAAGCAGGCACTTTTGGCAAAGAAGGAGCAGAGAAAAGGAAAAGAATTCAGATTTAAGCGACTGG

AATCATTCCTACATGATTCCTGGCGGCAGAAACGTGACCACGTGCGCATCAGACGACTAGAAGTAAAACCTCATGCTTTG

GAAGTACCTGATAAACATTCCTTGGCCTTTGTTGTACGCATCCAAAGGATTGATGGGGTGAGTTTACTGGTACAGAGGAC

CATTGCAAGACTTCGTCTGAAGAAAATATTTAGTGGTGTCTTTGTTAAAGTCACCCCCAAAAGCCTAAAAATGCTACGGA

TAGTAGAACCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTCCGGGAACTCATCTTGAAACGTGGACAAGCAAGG

GTCAAGAATAAGACCATCCCCCTGACAGACAACACAATGATTGAGGAGCATCTGGGGAAGTTTGATGTCATTTGTCTGGA

AGACCTCATTCATGAAATTGCCTTCCCGGGGAAGCATTTTTGGGAGATCTCTGGATTCTTGTGCCCTTTCCACCTCTCTG

TTGCTCGTCATGCTACCAAAAATAGAGTGGGTTTCCTCAAGGAGATGGGCTTACCTGGCTATCGGGGTGAACGCATCAAT

CAGCTCATCCGCCAGCTGAACTAA

Species	Parental gene accession	Homology type	Retrogenes number
Ailuropoda melanoleuca	ENSAMEG00000012791	ortholog_one2many	2 retrogenes	retro_amel_1260, retro_amel_243,
Bos taurus	ENSBTAG00000018478	ortholog_one2many	2 retrogenes	retro_btau_588, retro_btau_816,
Canis familiaris	ENSCAFG00000001728	ortholog_many2many	4 retrogenes	retro_cfam_1180, retro_cfam_1464, retro_cfam_1638, retro_cfam_330,
Choloepus hoffmanni	ENSCHOG00000000306	ortholog_one2many	4 retrogenes	retro_chof_1168, retro_chof_1404, retro_chof_388, retro_chof_478,
Cavia porcellus	ENSCPOG00000021189	possible_ortholog	2 retrogenes	retro_cpor_1134, retro_cpor_653,
Dasypus novemcinctus	ENSDNOG00000013485	ortholog_one2many	1 retrogene	retro_dnov_689,
Equus caballus	ENSECAG00000003113	ortholog_one2many	1 retrogene	retro_ecab_998,
Erinaceus europaeus	ENSEEUG00000010431	ortholog_one2many	1 retrogene	retro_eeur_90,
Echinops telfairi	ENSETEG00000002419	ortholog_one2many	3 retrogenes	retro_etel_1151, retro_etel_1823, retro_etel_542,
Felis catus	ENSFCAG00000009707	ortholog_one2many	1 retrogene	retro_fcat_143,
Homo sapiens	ENSG00000146223	possible_ortholog	22 retrogenes	retro_hsap_1285, retro_hsap_1291, retro_hsap_1602, retro_hsap_1623, retro_hsap_1661, retro_hsap_1836, retro_hsap_2201, retro_hsap_2389, retro_hsap_2735, retro_hsap_2845, retro_hsap_3053, retro_hsap_3068, retro_hsap_3077, retro_hsap_3187, retro_hsap_3250, retro_hsap_3373, retro_hsap_3556, retro_hsap_3641, retro_hsap_3846, retro_hsap_3957, retro_hsap_4770, retro_hsap_4827,
Gorilla gorilla	ENSGGOG00000009958	possible_ortholog	15 retrogenes	retro_ggor_1009, retro_ggor_1013, retro_ggor_1253, retro_ggor_1261, retro_ggor_1904, retro_ggor_2099, retro_ggor_2108, retro_ggor_2113, retro_ggor_2162, retro_ggor_2282, retro_ggor_2457, retro_ggor_2524, retro_ggor_2591, retro_ggor_2659, retro_ggor_2973,
Macaca mulatta	ENSMMUG00000021313	possible_ortholog	1 retrogene	retro_mmul_11,
Monodelphis domestica	ENSMODG00000019028	ortholog_one2many	1 retrogene	retro_mdom_1708,
Mustela putorius furo	ENSMPUG00000013296	ortholog_one2many	1 retrogene	retro_mputfur_1577,
Mus musculus	ENSMUSG00000063888	possible_ortholog	4 retrogenes	retro_mmus_2359, retro_mmus_3172, retro_mmus_3626, retro_mmus_777,
Nomascus leucogenys	ENSNLEG00000004649	possible_ortholog	21 retrogenes	retro_nleu_1375, retro_nleu_1597, retro_nleu_1646, retro_nleu_1661, retro_nleu_2007, retro_nleu_2011, retro_nleu_2017, retro_nleu_2138, retro_nleu_2201, retro_nleu_2282, retro_nleu_2562, retro_nleu_2599, retro_nleu_2694, retro_nleu_2863, retro_nleu_2938, retro_nleu_332, retro_nleu_502, retro_nleu_536, retro_nleu_597, retro_nleu_711, retro_nleu_727,
Oryctolagus cuniculus	ENSOCUG00000003844	possible_ortholog	6 retrogenes	retro_ocun_1393, retro_ocun_1604, retro_ocun_1818, retro_ocun_278, retro_ocun_509, retro_ocun_598,
Otolemur garnettii	ENSOGAG00000012671	possible_ortholog	3 retrogenes	retro_ogar_1380, retro_ogar_3358, retro_ogar_3428,
Pongo abelii	ENSPPYG00000016619	possible_ortholog	21 retrogenes	retro_pabe_1064, retro_pabe_1069, retro_pabe_1315, retro_pabe_1341, retro_pabe_1370, retro_pabe_1379, retro_pabe_1457, retro_pabe_2078, retro_pabe_2154, retro_pabe_2354, retro_pabe_2527, retro_pabe_2543, retro_pabe_2598, retro_pabe_2609, retro_pabe_2644, retro_pabe_2988, retro_pabe_3053, retro_pabe_3259, retro_pabe_3410, retro_pabe_3714, retro_pabe_3753,
Pan troglodytes	ENSPTRG00000018175	possible_ortholog	23 retrogenes	retro_ptro_1074, retro_ptro_1088, retro_ptro_1127, retro_ptro_1162, retro_ptro_1671, retro_ptro_1849, retro_ptro_1927, retro_ptro_1987, retro_ptro_2069, retro_ptro_2076, retro_ptro_2198, retro_ptro_2257, retro_ptro_2293, retro_ptro_2416, retro_ptro_2466, retro_ptro_2622, retro_ptro_2686, retro_ptro_2916, retro_ptro_2933, retro_ptro_3212, retro_ptro_355, retro_ptro_878, retro_ptro_882,
Pteropus vampyrus	ENSPVAG00000008696	ortholog_one2many	3 retrogenes	retro_pvam_1179, retro_pvam_1482, retro_pvam_975,
Rattus norvegicus	ENSRNOG00000016269	possible_ortholog	1 retrogene	retro_rnor_2795,
Sorex araneus	ENSSARG00000005286	ortholog_one2many	2 retrogenes	retro_sara_100, retro_sara_211,
Sarcophilus harrisii	ENSSHAG00000011219	ortholog_one2many	1 retrogene	retro_shar_216,
Sus scrofa	ENSSSCG00000026472	ortholog_one2many	3 retrogenes	retro_sscr_198, retro_sscr_756, retro_sscr_807,
Ictidomys tridecemlineatus	ENSSTOG00000004586	within_species_paralog	18 retrogenes	retro_itri_1025, retro_itri_1080, retro_itri_1358, retro_itri_1375, retro_itri_1412, retro_itri_1430, retro_itri_1464, retro_itri_1593, retro_itri_1776, retro_itri_271, retro_itri_346, retro_itri_349, retro_itri_351, retro_itri_390, retro_itri_534, retro_itri_542, retro_itri_827, retro_itri_917,
Tarsius syrichta	ENSTSYG00000004848	possible_ortholog	16 retrogenes	retro_tsyr_1312, retro_tsyr_1340, retro_tsyr_1380, retro_tsyr_1399, retro_tsyr_1729, retro_tsyr_1914, retro_tsyr_1933, retro_tsyr_2161, retro_tsyr_357, retro_tsyr_455, retro_tsyr_469, retro_tsyr_581, retro_tsyr_606, retro_tsyr_642, retro_tsyr_703, retro_tsyr_856,
Tursiops truncatus	ENSTTRG00000006971	ortholog_one2many	6 retrogenes	retro_ttru_1194, retro_ttru_171, retro_ttru_361, retro_ttru_498, retro_ttru_528, retro_ttru_915,
Vicugna pacos	ENSVPAG00000008894	ortholog_one2many	2 retrogenes	retro_vpac_386, retro_vpac_584,

#	RetrogeneDB ID	Identity (%)	Coverage (%)	ORF conservation	Expression evidence	RDV
1.	retro_itri_417	81.10	51.01	Please wait, loading	Please wait, loading	Please wait, loading
2.	retro_itri_1233	90.60	94.33	Please wait, loading	Please wait, loading	Please wait, loading

Download FASTA sequences of all ENSSTOG00000009841 retrocopies

Parental gene:	ENSSTOG00000009841
Aliases:	None
Description:	None
Organism:	*Squirrel (Ictidomys tridecemlineatus)*
Coordinates:	JH393286.1:17023321..17030260(-)

Parental gene:

ENSSTOG00000009841