RetrogeneDB ID: | retro_hsap_1602 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 15:79960795..79961415(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000259208 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSG00000146223 | ||
Aliases: | RPL7L1, dJ475N16.4 | ||
Description: | ribosomal protein L7-like 1 [Source:HGNC Symbol;Acc:21370] |
Percent Identity: | 89.42 % |
Parental protein coverage: | 84.15 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MAEQEQRKIPLVPENLLKKRKAYQALKATQAKQALLAKKEQKKGKGLRFKRLESFLHDSWRQKRDKVRLR |
MAEQEQRKI.LVPENLLKK.K.YQALKATQAK.ALLAKKEQ.KGKG.RFKRLESFLHD.W.QK.DKV.LR | |
Retrocopy | MAEQEQRKISLVPENLLKKGKVYQALKATQAKEALLAKKEQRKGKGFRFKRLESFLHDFWQQKHDKVCLR |
Parental | RLEVKPHALELPDKHSLA-FVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVT |
.LEVK.HALELPDKHSLA.FVVR.ERIDGVSLLVQRTIARL.LKKIFSGVFVKVTPQNLKMLR.VEPYVT | |
Retrocopy | *LEVKSHALELPDKHSLA<FVVRMERIDGVSLLVQRTIARLCLKKIFSGVFVKVTPQNLKMLRMVEPYVT |
Parental | WGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLC |
WGFPNL.SV.ELILK.GQAKVKNKT.PLT.NTVIEEHLGKFGVICLEDLIHEIAFPGKHF.EISWFLC | |
Retrocopy | WGFPNLMSVLELILKHGQAKVKNKTLPLTANTVIEEHLGKFGVICLEDLIHEIAFPGKHF*EISWFLC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 71 .24 RPM |
bodymap2_adrenal | 0 .00 RPM | 85 .66 RPM |
bodymap2_brain | 0 .00 RPM | 66 .31 RPM |
bodymap2_breast | 0 .00 RPM | 72 .96 RPM |
bodymap2_colon | 0 .00 RPM | 69 .94 RPM |
bodymap2_heart | 0 .00 RPM | 51 .54 RPM |
bodymap2_kidney | 0 .00 RPM | 94 .84 RPM |
bodymap2_liver | 0 .00 RPM | 76 .83 RPM |
bodymap2_lung | 0 .00 RPM | 47 .63 RPM |
bodymap2_lymph_node | 0 .00 RPM | 69 .64 RPM |
bodymap2_ovary | 0 .00 RPM | 87 .92 RPM |
bodymap2_prostate | 0 .00 RPM | 75 .95 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 43 .31 RPM |
bodymap2_testis | 0 .00 RPM | 63 .35 RPM |
bodymap2_thyroid | 0 .00 RPM | 105 .78 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 81 .43 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1074 |
Pongo abelii | retro_pabe_1315 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |