RetrogeneDB ID: | retro_ptro_2416 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 6:10450400..10450881(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSPTRG00000018175 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.3 % |
Parental protein coverage: | 65.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SLAFVVRIERIDGVSLL-VQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILK |
SLAFV...ERI.GVS.L.VQR.IARL.LKKIFSGVFVKVT..NLKML.IVEPYVT.GFPN.K.V..LILK | |
Retrocopy | SLAFVILLERINGVSYL<VQRIIARLYLKKIFSGVFVKVTR*NLKMLHIVEPYVTQGFPNVKFVWDLILK |
Parental | RGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLHPFHLSVA-RHATKNRVG |
..QA.VKNK.IPLTDNTVIEE.LGKFGVICLE.LIHEIA.P.K.FQEI.WFLHPFHLSVA.....KNR.G | |
Retrocopy | CRQATVKNKAIPLTDNTVIEEYLGKFGVICLEELIHEIALPRKYFQEILWFLHPFHLSVA<LSTAKNRMG |
Parental | FLKEMGTPGYRGERINQLIRQLN |
FL.EMG.PGY.GE.INQLI.QLN | |
Retrocopy | FLREMGLPGYQGECINQLIHQLN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 15 .94 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .15 RPM |
SRP007412_heart | 0 .00 RPM | 6 .56 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .80 RPM |
SRP007412_liver | 0 .00 RPM | 6 .84 RPM |
SRP007412_testis | 0 .00 RPM | 2 .42 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3556 |