RetrogeneDB ID:

retro_nleu_2562

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397372.1:927875..928637(-)
Located in intron of:ENSNLEG00000008379
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL7L1
Ensembl ID:ENSNLEG00000004649
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2562
ATGATCAGTAGCTACAACTCTAGAAAGATGATGGAGCAAGAGCAAAGAAAAATCCCTTTGGTTCCAGAAAATCTTCTGAA
AAGAGGAAGGCTTATCAAGTCCTCAAAGCCACCTAGGCAAAGCAGGCACTTTAGGTGAAGAAGGAGCAGAGGAAAGGAAA
AGAGCTCAGGTTAAACAACTGGAATCATTCCTATATGATTCCTGGTGGCAGAAACGTGACAAGATGCGTCTCAGGCAACT
AGAAGTGAAACCTCATGCCTTGGAATTGCCAGGTAACATTCCCTGGCCTTTATTGTATGCATTGAAAGGATTAATGGCAT
GAGTTTACTGGTGCAGAGAACCATGGCAAGACTTCGCCTAAAGAAAATTTTTAGTGGTGTCTTTGTAAAAGTCACCCCCC
AGAACCTAAAAATGCTGCGTATAGTGGAAACTTATGTGACCTGGGGATTTCCACATCTGAAGTCTGCCTGGGAACTCATT
TTGAAATGTGGACGAGCCAAGGTCAAGAATAAGACCATCTCTCAGACAGACAACACAGTGATGAGGAGCACTGGGGGAGT
TTTGGTGTCATTTGCTTGGAAGACCTCATTCATGAAATTGCCTTCCTGGGGAAGCATTTCCAGGAGATCTCATGGTTTTT
GCGCCCTTTCCACCTCTCAGTGGCCCATCATGCTACCACAAATAGAGTGGGTTTCCTCAAGGAGATGGGCCCCACCTGGC
TGTCGGGGTGAACACATCAATCAGCTCATCCACCAGCTGAAC

ORF - retro_nleu_2562 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.54 %
Parental protein coverage: 100. %
Number of stop codons detected: 2
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalMISSCTAGKMAEQEQRKIPLVPENLLK-KRKAYQALKATQAKQALLAKKEQKKGKGLRF-KRLESFLHDS
MISS....KM.EQEQRKIPLVPENLLK.KRKAYQ.LKAT.AKQAL..KKEQ.KGK.LR..K.LESFL.DS
RetrocopyMISSYNSRKMMEQEQRKIPLVPENLLK<KRKAYQVLKAT*AKQAL*VKKEQRKGKELRL<KQLESFLYDS
ParentalWRQIRDKVRLRRLEVKPHALELPDK-HSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNL
W.Q.RDK.RLR.LEVKPHALELP...HSLAF.V.IERI.G.SLLVQRT.ARLRLKKIFSGVFVKVTPQNL
RetrocopyWWQKRDKMRLRQLEVKPHALELPGN<HSLAFIVCIERINGMSLLVQRTMARLRLKKIFSGVFVKVTPQNL
ParentalKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVI-EEHLGKFGVICLEDLIHEIAFPGK
KMLRIVE.YVTWGFP.LKS..ELILK.G.AKVKNKTI..TDNTV..EEH.G.FGVICLEDLIHEIAF.GK
RetrocopyKMLRIVETYVTWGFPHLKSAWELILKCGRAKVKNKTISQTDNTVM<EEHWGSFGVICLEDLIHEIAFLGK
ParentalHFQEISWFLRPFHLSVARHATKNRVGFLKEMG-TPGYRGERINQLIRQLN
HFQEISWFLRPFHLSVA.HAT.NRVGFLKEMG..PG.RGE.INQLI.QLN
RetrocopyHFQEISWFLRPFHLSVAHHATTNRVGFLKEMG>PPGCRGEHINQLIHQLN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2562 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 26 parental genes, and 124 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000127912 retrocopies
Bos taurus ENSBTAG000000184782 retrocopies
Canis familiaris ENSCAFG000000017284 retrocopies
Choloepus hoffmanni ENSCHOG000000003064 retrocopies
Cavia porcellus ENSCPOG000000211892 retrocopies
Dasypus novemcinctus ENSDNOG000000134851 retrocopy
Equus caballus ENSECAG000000031131 retrocopy
Erinaceus europaeus ENSEEUG000000104311 retrocopy
Echinops telfairi ENSETEG000000024193 retrocopies
Felis catus ENSFCAG000000097071 retrocopy
Homo sapiens ENSG0000014622322 retrocopies
Monodelphis domestica ENSMODG000000190281 retrocopy
Mustela putorius furoENSMPUG000000132961 retrocopy
Mus musculus ENSMUSG000000638884 retrocopies
Nomascus leucogenys ENSNLEG00000004649 21 retrocopies
Nomascus leucogenys ENSNLEG000000266158 retrocopies
Otolemur garnettii ENSOGAG000000126713 retrocopies
Pan troglodytes ENSPTRG0000001817523 retrocopies
Pteropus vampyrus ENSPVAG000000086963 retrocopies
Rattus norvegicus ENSRNOG000000162691 retrocopy
Sorex araneus ENSSARG000000052862 retrocopies
Sarcophilus harrisii ENSSHAG000000112191 retrocopy
Sus scrofa ENSSSCG000000264723 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000098412 retrocopies
Tursiops truncatus ENSTTRG000000069716 retrocopies
Vicugna pacos ENSVPAG000000088942 retrocopies



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