Parental gene:

RPL7L1, ENSNLEG00000004649

Aliases:None
Description:None
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397304.1:16932141..16940688(-)


>ENSNLEG00000004649
ATGATCAGTAGCTGCACCGCTGGAAAGATGGCGGAGCAAGAGCAAAGAAAAATCCCTTTGGTTCCAGAAAATCTCCTGAA
AAAGAGGAAGGCTTATCAAGCCCTCAAAGCCACCCAGGCAAAGCAGGCACTTTTGGCAAAGAAGGAGCAGAAGAAAGGAA
AAGGGCTCAGGTTTAAGCGACTGGAATCATTCCTACATGATTCCTGGCGGCAGATACGTGACAAGGTGCGTCTCAGACGA
CTAGAAGTGAAACCTCATGCCTTGGAATTGCCAGATAAACATTCCTTGGCCTTTGTTGTACGTATCGAAAGGATTGATGG
CGTGAGTTTACTGGTGCAGAGAACCATTGCAAGACTTCGCTTAAAGAAAATTTTTAGTGGTGTCTTTGTAAAAGTCACCC
CCCAGAATCTAAAAATGCTACGTATAGTGGAACCTTATGTGACCTGGGGATTTCCAAATCTGAAGTCTGTCCGAGAACTC
ATTTTGAAACGTGGACAAGCCAAGGTCAAGAATAAGACCATCCCTCTGACAGACAACACAGTGATTGAGGAGCACCTGGG
GAAGTTTGGCGTCATTTGCTTGGAAGACCTCATTCATGAAATTGCCTTCCCAGGGAAGCATTTCCAGGAGATCTCATGGT
TCTTGCGCCCTTTCCACCTCTCAGTGGCCCGTCATGCTACCAAAAATAGAGTGGGCTTCCTCAAGGAGATGGGCACACCT
GGCTATCGGGGTGAACGCATCAATCAGCTCATCCGCCAGCTGAACTAG

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012791 ortholog_one2one 2 retrogenes
retro_amel_1260, retro_amel_243,
Bos taurus ENSBTAG00000018478 ortholog_one2one 2 retrogenes
retro_btau_588, retro_btau_816,
Canis familiaris ENSCAFG00000001728 ortholog_one2many 4 retrogenes
retro_cfam_1180, retro_cfam_1464, retro_cfam_1638, retro_cfam_330,
Choloepus hoffmanni ENSCHOG00000000306 ortholog_one2one 4 retrogenes
retro_chof_1168, retro_chof_1404, retro_chof_388, retro_chof_478,
Cavia porcellus ENSCPOG00000021189 possible_ortholog 2 retrogenes
retro_cpor_1134, retro_cpor_653,
Dasypus novemcinctus ENSDNOG00000013485 ortholog_one2one 1 retrogene
retro_dnov_689,
Equus caballus ENSECAG00000003113 ortholog_one2one 1 retrogene
retro_ecab_998,
Erinaceus europaeus ENSEEUG00000010431 ortholog_one2one 1 retrogene
retro_eeur_90,
Echinops telfairi ENSETEG00000002419 ortholog_one2one 3 retrogenes
retro_etel_1151, retro_etel_1823, retro_etel_542,
Felis catus ENSFCAG00000009707 ortholog_one2one 1 retrogene
retro_fcat_143,
Homo sapiens ENSG00000146223 ortholog_one2one 22 retrogenes
retro_hsap_1285, retro_hsap_1291, retro_hsap_1602, retro_hsap_1623, retro_hsap_1661, retro_hsap_1836, retro_hsap_2201, retro_hsap_2389, retro_hsap_2735, retro_hsap_2845, retro_hsap_3053, retro_hsap_3068, retro_hsap_3077, retro_hsap_3187, retro_hsap_3250, retro_hsap_3373, retro_hsap_3556, retro_hsap_3641, retro_hsap_3846, retro_hsap_3957, retro_hsap_4770, retro_hsap_4827,
Monodelphis domestica ENSMODG00000019028 ortholog_one2one 1 retrogene
retro_mdom_1708,
Mustela putorius furo ENSMPUG00000013296 ortholog_one2one 1 retrogene
retro_mputfur_1577,
Mus musculus ENSMUSG00000063888 possible_ortholog 4 retrogenes
retro_mmus_2359, retro_mmus_3172, retro_mmus_3626, retro_mmus_777,
Nomascus leucogenys ENSNLEG00000026615 within_species_paralog 8 retrogenes
retro_nleu_1012, retro_nleu_1459, retro_nleu_1696, retro_nleu_1853, retro_nleu_2479, retro_nleu_2603, retro_nleu_3, retro_nleu_901,
Otolemur garnettii ENSOGAG00000012671 possible_ortholog 3 retrogenes
retro_ogar_1380, retro_ogar_3358, retro_ogar_3428,
Pan troglodytes ENSPTRG00000018175 ortholog_one2one 23 retrogenes
retro_ptro_1074, retro_ptro_1088, retro_ptro_1127, retro_ptro_1162, retro_ptro_1671, retro_ptro_1849, retro_ptro_1927, retro_ptro_1987, retro_ptro_2069, retro_ptro_2076, retro_ptro_2198, retro_ptro_2257, retro_ptro_2293, retro_ptro_2416, retro_ptro_2466, retro_ptro_2622, retro_ptro_2686, retro_ptro_2916, retro_ptro_2933, retro_ptro_3212, retro_ptro_355, retro_ptro_878, retro_ptro_882,
Pteropus vampyrus ENSPVAG00000008696 ortholog_one2one 3 retrogenes
retro_pvam_1179, retro_pvam_1482, retro_pvam_975,
Rattus norvegicus ENSRNOG00000016269 possible_ortholog 1 retrogene
retro_rnor_2795,
Sorex araneus ENSSARG00000005286 ortholog_one2one 2 retrogenes
retro_sara_100, retro_sara_211,
Sarcophilus harrisii ENSSHAG00000011219 ortholog_one2one 1 retrogene
retro_shar_216,
Sus scrofa ENSSSCG00000026472 ortholog_one2one 3 retrogenes
retro_sscr_198, retro_sscr_756, retro_sscr_807,
Ictidomys tridecemlineatus ENSSTOG00000009841 possible_ortholog 2 retrogenes
retro_itri_1233, retro_itri_417,
Tursiops truncatus ENSTTRG00000006971 ortholog_one2one 6 retrogenes
retro_ttru_1194, retro_ttru_171, retro_ttru_361, retro_ttru_498, retro_ttru_528, retro_ttru_915,
Vicugna pacos ENSVPAG00000008894 ortholog_one2one 2 retrogenes
retro_vpac_386, retro_vpac_584,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_nleu_332 84.58 83.92
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2. retro_nleu_502 88.24 100.00
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3. retro_nleu_536 83.07 99.61
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4. retro_nleu_597 86.03 89.41
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5. retro_nleu_711 81.42 98.82
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6. retro_nleu_727 87.70 98.82
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7. retro_nleu_1375 80.86 63.14
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8. retro_nleu_1597 73.85 50.98
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9. retro_nleu_1646 84.71 99.61
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10. retro_nleu_1661 91.37 100.00
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11. retro_nleu_2007 92.16 100.00
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12. retro_nleu_2011 85.10 99.61
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13. retro_nleu_2017 85.06 67.84
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14. retro_nleu_2138 88.21 89.80
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15. retro_nleu_2201 93.33 52.94
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16. retro_nleu_2282 85.83 99.22
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17. retro_nleu_2562 81.54 100.00
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18. retro_nleu_2599 83.80 84.31
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19. retro_nleu_2694 88.74 58.82
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20. retro_nleu_2863 83.76 91.37
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21. retro_nleu_2938 88.07 67.84
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Download FASTA sequences of all ENSNLEG00000004649 retrocopies