RetrogeneDB ID: | retro_fcat_143 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:6540854..6541250(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSFCAG00000009707 | ||
Aliases: | None | ||
Description: | ribosomal protein L7-like 1 [Source:HGNC Symbol;Acc:21370] |
Percent Identity: | 61.94 % |
Parental protein coverage: | 62.62 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | QKKGK--EVKFKRLEWFLHDSWRQQRDRVRLR-RLEVKPHGLEVPDKHSLAFVVR-IQRINGVSS-LVQR |
QKKGK..EVKFK.LE..LH.S..Q.RD......RL.VK.H..EVPDKH..AFVV..IQR.NGV...L..R | |
Retrocopy | QKKGKRKEVKFK*LELLLHNS*QQ*RDKEHRK*RLKVKLHVFEVPDKHPVAFVVA<IQRVNGVIL>LARR |
Parental | TIARLRLKKIFSGVFFRVTPQTIKTLRIVEPYVAWGFPNLKSVRELILKRGQAKVKNKTIPLTD |
.IA.L.L...F......V.PQTIKTL..VEPYV.WGFPNLKSV.ELILKR..AKVKNK.I.L.D | |
Retrocopy | LIASLPLEEDFQ*CLVKVIPQTIKTLQRVEPYVTWGFPNLKSV*ELILKRRRAKVKNKSISLID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .89 RPM |
SRP017611_kidney | 0 .00 RPM | 60 .70 RPM |
SRP017611_liver | 0 .00 RPM | 21 .63 RPM |