RetrogeneDB ID: | retro_tbel_2703 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_117072:3396..3998(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSTBEG00000008238 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] |
Percent Identity: | 85.85 % |
Parental protein coverage: | 54.16 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY-ATVEEVD |
M.K.ESPKE.EQL.KLF.G.LSFETTDESL.SHF.QWGTLTDC.VM.DPN.K.SR.FGFVTY.ATVEEVD | |
Retrocopy | MFK*ESPKELEQLQKLFVGRLSFETTDESLKSHF*QWGTLTDCIVMQDPNPKHSRVFGFVTY>ATVEEVD |
Parental | AAMNARPHKVDG-RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT |
AAMNARPHKVD..RVVEPKRA.SREDSQR.GA.LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT | |
Retrocopy | AAMNARPHKVDK<RVVEPKRAISREDSQRQGAQLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT |
Parental | DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSPR-GRSGSGNF |
D.GSGKKRGFAFVTFD.H.SVDKIVI.KYHTVNGHNCEVRK.L.KQEMASASSS...GR.GSGNF | |
Retrocopy | DQGSGKKRGFAFVTFDGHYSVDKIVI*KYHTVNGHNCEVRKVLFKQEMASASSSKE<GR-GSGNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |