RetrogeneDB ID: | retro_tbel_2666 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_115922:130083..130649(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSTBEG00000008238 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] |
Percent Identity: | 90.1 % |
Parental protein coverage: | 50.67 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA |
MSK.ESP.E.EQLRKLFIGGLSFETT.ESLRSHFEQWG.LTDCVVM.DPNTK.SRGF.FVTYATV.EVD. | |
Retrocopy | MSKFESPEELEQLRKLFIGGLSFETTSESLRSHFEQWGMLTDCVVM*DPNTKCSRGFEFVTYATVKEVDV |
Parental | AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDT-EEHHLRDYFEQYGKIEVIEIMTD |
AMNARPHKVDGRVVEPKRAVSREDS.RPGAHLTVKKIFVGGIKEDT..EH.LRDYFEQYGKIEVIEIMTD | |
Retrocopy | AMNARPHKVDGRVVEPKRAVSREDSHRPGAHLTVKKIFVGGIKEDT>GEHRLRDYFEQYGKIEVIEIMTD |
Parental | RGSGKKR-GFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVR-KALSKQEMASA |
.GSGKKR.GFAFVTFDDHDSVDKIVIQKYHTVN.H.CEVR.KALSKQEMASA | |
Retrocopy | QGSGKKR<GFAFVTFDDHDSVDKIVIQKYHTVNSHYCEVR<KALSKQEMASA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |