RetrogeneDB ID: | retro_tbel_79 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1040:86883..87489(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSTBEG00000008238 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] |
Percent Identity: | 97.03 % |
Parental protein coverage: | 54.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA |
MSKSESPKE.EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK.SRGFGFVT.ATVEEVDA | |
Retrocopy | MSKSESPKELEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKHSRGFGFVTSATVEEVDA |
Parental | AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR |
AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTV.KIFVGGIKEDTEEHHLRDYFEQYGKI.VIEIMTDR | |
Retrocopy | AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVEKIFVGGIKEDTEEHHLRDYFEQYGKIKVIEIMTDR |
Parental | GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSPRGRSGSGNF |
GSGKKRGFAF.TFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSPRGRSGSGNF | |
Retrocopy | GSGKKRGFAFKTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSPRGRSGSGNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |