RetrogeneDB ID:

retro_pvam_603

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_4009:18679..19026(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSPVAG00000012022
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_pvam_603
GAAGTGCTCTACACGTGCCTGGGCAACGACTTCCACACCAACAAGAAGGTGTGCGAGGCAATTGCCATTGTACCCAGCAG
GAAGCTCTGCACAAAGTAGAAAGCTATGTCACTCGTCTGATGAGGCAGGTTCTGAGAGGCCCTGTGAGAGTTATCTCCAT
CGAGCTGCAGGAAGAGGAGAGAGAAAGGAGAGGTAATTCTGTTCTTGAGGTTTCAGCCCAAGATCAGCAGATCACTGAAG
TCGGTCCTGACACTAAGGAAATGCTGAAGTCCTTGAACTTTGCAGTTCAACTGCATGTCACTCAGCCTACAGTTAAGATG
TATTTCAAAACACCATGTGGAATCATT

ORF - retro_pvam_603 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 66.39 %
Parental protein coverage: 87.41 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalEKYYTRLGNDFHTNKRVCEEIAIIPSKKL-RNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVP
E..YT.LGNDFHTNK.VCE.IAI.PS.KL...K...YVT.LM....RGPVR.ISI.LQEEERERR.N.V.
RetrocopyEVLYTCLGNDFHTNKKVCEAIAIVPSRKL<LHKVESYVTRLMRQVLRGPVRVISIELQEEERERRGNSVL
ParentalEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV
EVSA.DQ.I.EV.PDTKEMLK.L.F.....L.VTQPTV.M.FKTP.G..
RetrocopyEVSAQDQQITEVGPDTKEMLKSLNFA--VQLHVTQPTVKMYFKTPCGII

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_603 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 129 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000122254 retrocopies
Bos taurus ENSBTAG000000006224 retrocopies
Canis familiaris ENSCAFG000000130539 retrocopies
Dasypus novemcinctus ENSDNOG000000126336 retrocopies
Equus caballus ENSECAG000000249021 retrocopy
Echinops telfairi ENSETEG0000000803510 retrocopies
Felis catus ENSFCAG000000023587 retrocopies
Homo sapiens ENSG0000018277411 retrocopies
Homo sapiens ENSG000001847795 retrocopies
Myotis lucifugus ENSMLUG000000228303 retrocopies
Macaca mulatta ENSMMUG000000113276 retrocopies
Monodelphis domestica ENSMODG000000020119 retrocopies
Mus musculus ENSMUSG0000006178712 retrocopies
Oryctolagus cuniculus ENSOCUG000000063701 retrocopy
Otolemur garnettii ENSOGAG0000002410716 retrocopies
Pongo abelii ENSPPYG000000068883 retrocopies
Pteropus vampyrus ENSPVAG00000012022 8 retrocopies
Rattus norvegicus ENSRNOG000000191066 retrocopies
Sorex araneus ENSSARG000000130012 retrocopies
Sus scrofa ENSSSCG000000273582 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000062982 retrocopies
Tursiops truncatus ENSTTRG000000130112 retrocopies



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