RetrogeneDB ID:

retro_ogar_579

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873523.1:36568840..36569197(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000024107
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_579
AAGAAGGGCTACATGCGTCTGGGCAATGACTTTCACACGTACAAGTGCGTGTGCAAGGAAGAGATGGCCATCATTCCCAG
CAAGAAGCTTCGCAACGAGATAGCAGGCTAAGTCACACACCTGATGACAGGGATCCAGAGGGGCCCAGTGAGAGGCATCT
CCATCACGCTGCAGGAAGAGGGGAGAGAGCAGAGAGACAACTATGTCCCTGAGGTCTCAGCCCTGGATCAGGACATCAGT
GAAGTAGATCCTGACACTATGGAAATGCTGACGCTTTTGGACTTTGGCAGTCTGTCCAACCTCCAGGTCACTCAGCCTAC
AGTTGGGATGAATTTCAAAACAGCACGTGGAACTGTT

ORF - retro_ogar_579 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.03 %
Parental protein coverage: 87.41 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEKYYTRLGNDFHTNKRVC-EEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVP
.K.Y.RLGNDFHT.K.VC.EE.AIIPSKKLRN.IAG.VTHLM..IQRGPVRGISI.LQEE.RE.RDNYVP
RetrocopyKKGYMRLGNDFHTYKCVCKEEMAIIPSKKLRNEIAG*VTHLMTGIQRGPVRGISITLQEEGREQRDNYVP
ParentalEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGTV
EVSALDQ.I.EVDPDT.EML.LLDFGSLSNLQVTQPTVGMNFKT.RGTV
RetrocopyEVSALDQDISEVDPDTMEMLTLLDFGSLSNLQVTQPTVGMNFKTARGTV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_579 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 25 parental genes, and 149 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000122254 retrocopies
Bos taurus ENSBTAG000000006224 retrocopies
Canis familiaris ENSCAFG000000130539 retrocopies
Dasypus novemcinctus ENSDNOG000000126336 retrocopies
Equus caballus ENSECAG000000249021 retrocopy
Echinops telfairi ENSETEG0000000803510 retrocopies
Felis catus ENSFCAG000000023587 retrocopies
Homo sapiens ENSG0000018277411 retrocopies
Homo sapiens ENSG000001847795 retrocopies
Myotis lucifugus ENSMLUG000000228303 retrocopies
Macaca mulatta ENSMMUG000000113276 retrocopies
Monodelphis domestica ENSMODG000000020119 retrocopies
Mus musculus ENSMUSG0000006178712 retrocopies
Oryctolagus cuniculus ENSOCUG000000063701 retrocopy
Otolemur garnettii ENSOGAG00000024107 16 retrocopies
Ochotona princeps ENSOPRG000000047287 retrocopies
Procavia capensis ENSPCAG000000060353 retrocopies
Pongo abelii ENSPPYG000000068883 retrocopies
Pteropus vampyrus ENSPVAG000000120228 retrocopies
Rattus norvegicus ENSRNOG000000191066 retrocopies
Sorex araneus ENSSARG000000130012 retrocopies
Sarcophilus harrisii ENSSHAG0000001400410 retrocopies
Sus scrofa ENSSSCG000000273582 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000062982 retrocopies
Tursiops truncatus ENSTTRG000000130112 retrocopies



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