RetrogeneDB ID: | retro_mmus_697 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:20446411..20446807(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000083878 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps17 | ||
Ensembl ID: | ENSMUSG00000061787 | ||
Aliases: | None | ||
Description: | ribosomal protein S17 [Source:MGI Symbol;Acc:MGI:1309526] |
Percent Identity: | 92.48 % |
Parental protein coverage: | 98.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIK |
RVRTKTVKKAAR.IIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRN.IAGYVTHLMKRIQRGPVRGISIK | |
Retrocopy | RVRTKTVKKAARIIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNEIAGYVTHLMKRIQRGPVRGISIK |
Parental | LQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV |
LQE.......NYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKT.RGAV | |
Retrocopy | LQEXXXXXXXNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKT-RGAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 44 .76 RPM |
SRP007412_cerebellum | 0 .04 RPM | 37 .91 RPM |
SRP007412_heart | 0 .16 RPM | 90 .78 RPM |
SRP007412_kidney | 0 .31 RPM | 88 .05 RPM |
SRP007412_liver | 0 .05 RPM | 73 .27 RPM |
SRP007412_testis | 0 .41 RPM | 57 .40 RPM |