RetrogeneDB ID: | retro_sscr_408 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 14:21591651..21591954(+) | ||
Located in intron of: | ENSSSCG00000009714 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS17 | ||
Ensembl ID: | ENSSSCG00000027358 | ||
Aliases: | None | ||
Description: | Sus scrofa ribosomal protein S17 (RPS17), mRNA. [Source:RefSeq mRNA;Acc:NM_001001634] |
Percent Identity: | 85.15 % |
Parental protein coverage: | 74.81 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKE |
CEEIAII.SKKL.NKIAGYVTHLMKRIQRGPVR.ISIKL.........NYVPEVSALDQEIIEVDPDTKE | |
Retrocopy | CEEIAIISSKKLCNKIAGYVTHLMKRIQRGPVRDISIKLXXXXXXXXXNYVPEVSALDQEIIEVDPDTKE |
Parental | MLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV |
MLKLLDF..LSNLQVTQPTV.MNFKTPRGAV | |
Retrocopy | MLKLLDFSGLSNLQVTQPTVAMNFKTPRGAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .27 RPM | 466 .28 RPM |
SRP014902_testis | 2 .83 RPM | 1446 .43 RPM |
SRP018288_heart | 0 .00 RPM | 425 .38 RPM |
SRP018288_kidney | 0 .20 RPM | 391 .66 RPM |
SRP018288_liver | 0 .00 RPM | 341 .73 RPM |
SRP018288_lung | 0 .10 RPM | 469 .21 RPM |
SRP018856_adipose | 0 .06 RPM | 1145 .77 RPM |
SRP035408_brain | 0 .13 RPM | 484 .41 RPM |
SRP035408_liver | 0 .15 RPM | 557 .61 RPM |