Parental gene:

Cbx3, ENSDORG00000005487

Aliases:None
Description:chromobox 3 [Source:MGI Symbol;Acc:MGI:108515]
Organism:Kangaroo rat (Dipodomys ordii)
Coordinates:scaffold_12026:15297..25498(+)


>ENSDORG00000005487
ATGGCCTCTAACAAAACTACATTGCAAAAAATGGGAAAGAAACAAAATGGAAAGAGTAAAAAAGTTGAAGAAGCAGAGCC
TGAAGAATTTGTTGTGGAAAAAGTACTGGACCGACGTGTAGTGAATGGGAAAGTAGAATATTTCCTGAAGTGGAAAGGAT
TTACAGATGCTGATAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAATTAATTGAAGCATTTCTTAACTCTCAA
AAAGCTGGTAAAGAAAAGGATGGTACAAAAAGAAAATCTTTATCAGACAGTGAATCTGATGATAGCAAATCAAAGAAGAA
AAGAGATACTGCTGACAAACCAAGAGGTTTTGCCAGGGGTCTAGATCCTGAACGAATAATTGGTGCCACAGACAGCAGTG
GAGAATTGATGTTTCTCATGAAATGGAAAGATTCGGATGAAGCTGACTTGGTGCTGGCAAAAGAGGCGAATATGAAATGT
CCTCAGATTGTAATTGCATTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002897 possible_ortholog 11 retrogenes
retro_cfam_1157, retro_cfam_161, retro_cfam_1811, retro_cfam_1823, retro_cfam_1849, retro_cfam_2083, retro_cfam_502, retro_cfam_594, retro_cfam_739, retro_cfam_931, retro_cfam_948,
Callithrix jacchus ENSCJAG00000007952 possible_ortholog 8 retrogenes
retro_cjac_1100, retro_cjac_1414, retro_cjac_1612, retro_cjac_2405, retro_cjac_2623, retro_cjac_2728, retro_cjac_3322, retro_cjac_869,
Dipodomys ordii ENSDORG00000000716 within_species_paralog 2 retrogenes
retro_dord_594, retro_dord_709,
Loxodonta africana ENSLAFG00000006907 possible_ortholog 3 retrogenes
retro_lafr_661, retro_lafr_687, retro_lafr_776,
Myotis lucifugus ENSMLUG00000007591 ortholog_one2one 2 retrogenes
retro_mluc_2486, retro_mluc_813,
Mus musculus ENSMUSG00000029836 ortholog_one2one 1 retrogene
retro_mmus_77,
Otolemur garnettii ENSOGAG00000016583 possible_ortholog 1 retrogene
retro_ogar_136,
Ochotona princeps ENSOPRG00000011713 ortholog_one2one 9 retrogenes
retro_opri_103, retro_opri_159, retro_opri_209, retro_opri_300, retro_opri_429, retro_opri_569, retro_opri_598, retro_opri_728, retro_opri_733,
Pongo abelii ENSPPYG00000017714 ortholog_one2one 10 retrogenes
retro_pabe_2112, retro_pabe_2243, retro_pabe_2724, retro_pabe_2770, retro_pabe_2997, retro_pabe_3608, retro_pabe_758, retro_pabe_786, retro_pabe_892, retro_pabe_951,
Rattus norvegicus ENSRNOG00000011814 possible_ortholog 2 retrogenes
retro_rnor_120, retro_rnor_301,
Sarcophilus harrisii ENSSHAG00000017913 ortholog_one2one 1 retrogene
retro_shar_153,
Sus scrofa ENSSSCG00000016711 ortholog_one2one 4 retrogenes
retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dord_309 65.31 80.33
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2. retro_dord_405 90.68 87.98
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3. retro_dord_437 93.29 81.42
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4. retro_dord_440 92.81 90.16
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5. retro_dord_456 64.21 51.37
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6. retro_dord_502 98.37 100.00
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7. retro_dord_629 82.01 74.86
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8. retro_dord_630 92.97 100.00
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9. retro_dord_655 73.37 100.00
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10. retro_dord_700 60.64 50.82
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11. retro_dord_780 64.21 51.37
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Download FASTA sequences of all ENSDORG00000005487 retrocopies